Fast and accurate long-read assembly with wtdbg2
文献类型: 外文期刊
第一作者: Ruan, Jue
作者: Ruan, Jue;Ruan, Jue;Li, Heng;Li, Heng;Li, Heng
作者机构:
期刊名称:NATURE METHODS ( 影响因子:28.547; 五年影响因子:44.96 )
ISSN: 1548-7091
年卷期: 2020 年 17 卷 2 期
页码:
收录情况: SCI
摘要: Wtdbg2 assembles genomes with comparable contiguity and accuracy to existing tools using long-read sequencing data, and is several times faster, especially for large genomes. Existing long-read assemblers require thousands of central processing unit hours to assemble a human genome and are being outpaced by sequencing technologies in terms of both throughput and cost. We developed a long-read assembler wtdbg2 () that is 2-17 times as fast as published tools while achieving comparable contiguity and accuracy. It paves the way for population-scale long-read assembly in future.
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