Fast and accurate long-read assembly with wtdbg2

文献类型: 外文期刊

第一作者: Ruan, Jue

作者: Ruan, Jue;Ruan, Jue;Li, Heng;Li, Heng;Li, Heng

作者机构:

期刊名称:NATURE METHODS ( 影响因子:28.547; 五年影响因子:44.96 )

ISSN: 1548-7091

年卷期: 2020 年 17 卷 2 期

页码:

收录情况: SCI

摘要: Wtdbg2 assembles genomes with comparable contiguity and accuracy to existing tools using long-read sequencing data, and is several times faster, especially for large genomes. Existing long-read assemblers require thousands of central processing unit hours to assemble a human genome and are being outpaced by sequencing technologies in terms of both throughput and cost. We developed a long-read assembler wtdbg2 () that is 2-17 times as fast as published tools while achieving comparable contiguity and accuracy. It paves the way for population-scale long-read assembly in future.

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