GNN-FTuckER: A novel link prediction model for identifying suitable populations for tea varieties
文献类型: 外文期刊
第一作者: Li, Jun
作者: Li, Jun;Yang, Bing;Liu, Jiaxin;Wang, Xu;Wu, Zhongyuan;Huang, Qiang;Li, Jun;Yang, Bing;Li, Jun;He, Peng
作者机构:
期刊名称:PLOS ONE ( 影响因子:2.6; 五年影响因子:3.2 )
ISSN:
年卷期: 2025 年 20 卷 5 期
页码:
收录情况: SCI
摘要: Current research on tea primarily focuses on foundational studies of phenotypic characteristics, with insufficient exploration of the relationship between tea varieties and suitable populations. To address this issue, this paper proposes a link prediction model based on Graph Neural Networks (GNN) and tensor decomposition, named GNN-FTuckER, designed to predict the "tea suitability" relationships within the tea knowledge graph. This model integrates the SE-GNN structural encoder with an improved TuckER model decoder. The SE-GNN encoder enhances the modeling capability of the global graph structure by explicitly modeling relations, entities, and triples, thereby obtaining embedding vectors through aggregation, updating, and iterative operations. The improved TuckER model enhances the capture of complex semantics between entities and relations by introducing nonlinear activation functions. To support our research, we constructed a tea dataset, TeaPle. In comparative experiments, GNN-FTuckER achieved superior performance on both public datasets (WN18RR, FB15k-237) and the TeaPle dataset. Ablation studies indicate that the model improved H@10 by 4.3% on the WN18RR dataset and by 1.5% on the FB15k-237 dataset, with a 1.3% increase in MRR. In the TeaPle dataset, H@3 improved by 4.7% and H@10 increased by 3.1%. This research provides significant insights for further exploring the potential of tea varieties and evaluating the health benefits of tea consumption.
分类号:
- 相关文献
作者其他论文 更多>>
-
Niche differentiation of denitrifying anaerobic methane oxidation bacteria and archaea in the permafrost peatlands
作者:Fu, Lingyu;Wu, Xiangwen;Ma, Dalong;Yin, Weiping;Liu, Anwen;Wang, Xu;Yin, Weiping;Fu, Lingyu;Wu, Xiangwen;Ma, Dalong;Liu, Anwen;Wang, Xu;Wu, Xiangwen
关键词:Peatland; Denitrifying anaerobic methane oxidation; Niche differentiation; Permafrost; Potential activity
-
Male-specific bacteriophages and their potential on combating the spreading of T4SS-bearing antimicrobial resistance plasmids
作者:Li, Jun;Ji, Xing;Wang, Ran;He, Tao;Garcia, Pilar
关键词:Antimicrobial resistance; type IV secretion systems; T4SS; conjugation; male-specific phages
-
Determination and risk assessment of diazepam residues in aquatic products from China
作者:Chen, Xinglian;Fang, Haixian;Liu, Zhenhuan;Liu, Hongcheng;Lin, Tao;Li, Jun;Pu, Yali;Shi, Shaolong;He, Yunwei;Cheng, Long
关键词:Ultra-performance liquid chromatography-tandem mass spectrometry; aquatic products; diazepam; dietary risk assessment
-
Genetic advancements and future directions in ruminant livestock breeding: from reference genomes to multiomics innovations
作者:Xu, Songsong;Liu, Jiaxin;Feng, Xueyan;Yu, Yi;Yang, Ji;Wang, Yachun;Yu, Ying;Li, Menghua;Xu, Songsong;Liu, Jiaxin;Feng, Xueyan;Yu, Yi;Yang, Ji;Wang, Yachun;Yu, Ying;Li, Menghua;Xu, Songsong;Liu, Jiaxin;Feng, Xueyan;Yu, Yi;Yang, Ji;Wang, Yachun;Yu, Ying;Li, Menghua;Akhatayeva, Zhanerke;Badaoui, Bouabid;Esmailizadeh, Ali;Kantanen, Juha;Amills, Marcel;Amills, Marcel;Lenstra, Johannes A.;Johansson, Anna M.;Coltman, David W.;Coltman, David W.;Liu, George E.;Curik, Ino;Curik, Ino;Orozco-terWengel, Pablo;Paiva, Samuel R.;Zinovieva, Natalia A.;Zhang, Linwei;Liu, Zhihong;Li, Menghua
关键词:ruminant livestock; genomics; domestication; genetic improvement
-
A gold nanoparticle-enhanced dCas9-mediated fluorescence resonance energy transfer for nucleic acid detection
作者:Yang, Yao;Zhai, Shanshan;Wu, Yuhua;Li, Jun;Li, Yunjing;Li, Xiaofei;Wu, Gang;Gao, Hongfei;Yang, Yao;Zhang, Li;Zhu, Longjiao;Xu, Wentao
关键词:CRISPR/dCas9; Fluorescence resonance energy transfer; Gold nanoparticles; Recombinase polymerase amplification; Nucleic acid biosensing; Rapid detection
-
The nickel hyperaccumulator Odontarrhena chalcidica (Brassicaceae) preferentially takes up zinc over nickel
作者:Wang, Ya-Zhou;Geng, Ke-Rui;Tang, Ye-Tao;Mo, Bing-Lan;Liu, Ting;Qiu, Rong-Liang;Wen, Dian;Li, Fu-Rong;Wang, Xu;Li, Lei;Du, Rui-Ying;Deng, Teng-Hao-Bo;van der Ent, Antony;Morel, Jean-Louis
关键词:Nickel; Zinc; Hyperaccumulator; Uptake; Kinetics; Transporters
-
An idea for marine ranching planning based on ocean currents and its practice in Zhongjieshan Archipelago National Marine Ranching, China
作者:Tang, Shengming;Xu, Peng;Zhang, Shouyu;Gao, Junqi;Yin, Yuqi;Yin, Yuqi;Liang, Jun;Xu, Kaida;Jiang, Yazhou;Li, Jun;Feng, Jianlong
关键词:Maring ranching planning; Coastal currents; Zhongjieshan Archipelago; Zhoushan Archipelago; Drifters