Phylogenetic analysis of four Vibrio strains of pathogenic bacteria based on hemolysin genes and 16S rRNA genes

文献类型： 外文期刊

第一作者： Wang, Xiuli

作者： Wang, Xiuli;Yuan, Ye;Wang, Hongyue;Chang, Yaqing;Qiu, Xuemei;Zhou, Qunlan;Zhu, Jian;Cui, Yudong

作者机构：

关键词： Vibrio;hemolysin gene;16S rRNA gene;Phylogenetic analysis

期刊名称：2009 3RD INTERNATIONAL CONFERENCE ON BIOINFORMATICS AND BIOMEDICAL ENGINEERING, VOLS 1-11

ISSN：

年卷期： 2009 年

页码：

收录情况： SCI

摘要： In order to understand the phylogenetic relationships among Vibrio species more rationally, the hemolysin gene partial sequences of 4 Vibrio species (Vibrio alginolyticus, Vibrio harveyi, Vibrio parahaemolyticus, Vibrio minius) were amplifyed and sequenced. We constructed two separate phylogenetic trees by using 16S rRNA and partial hemolysin gene sequences, respectively. The average similarities of hemolysin gene of Vibrio species was 37.2 %. Meanwhile, the average similarity of 16S rRNA gene of Vibrio species was 91.4 %. The variabilities of hemolysin gene in Vibrio is greater than that of 16S rRNA gene. By comparing the phylogenetic trees, the topology of hemolysin gene tree is almost consistent with that of 16S rRNA gene tree. Consequently, the hemolysin gene possesses the superiority in phylogenetic taxonomy of the genus Vibrio. Taxonomic classification of Vibrios with hemolysin gene instead of 16S rRNA gene was proved a better approach.

分类号：

  • 相关文献

[1]Survival, growth performance and immune capacity of the juvenile lined seahorse Hippocampus erectus fed with rifampicin-treated copepods. Lin, Tingting,Wang, Changbo,Liu, Xin,Gao, Fen,Xiao, Dongxue,Zhang, Dong,Zhu, Xialian.

[2]The role of Cu/Zn-SOD and Mn-SOD in the immune response to oxidative stress and pathogen challenge in the clam Meretrix meretrix. Lu, Xia,Wang, Chao,Liu, Baozhong.

[3]Sensor histidine kinase is a beta-lactam receptor and induces resistance to beta-lactam antibiotics. Li, Lu,Zhang, Hui,Khan, Mazhar I.,Zhou, Xiaohui,Wang, Qiyao,Zhang, Hui,Yang, Minjun.

[4]A novel zoonotic Anaplasma species is prevalent in small ruminants: potential public health implications. Yang, Jifei,Liu, Zhijie,Niu, Qingli,Liu, Junlong,Han, Rong,Guan, Guiquan,Hassan, Muhammad Adeel,Liu, Guangyuan,Luo, Jianxun,Yin, Hong,Yin, Hong. 2017

[5]First molecular survey and identification of Anaplasma spp. in white yaks (Bos grunniens) in China. Yang, Jifei,Liu, Zhijie,Niu, Qingli,Liu, Junlong,Guan, Guiquan,Xie, Jingying,Luo, Jianxun,Yin, Hong,Wang, Shuqing,Wang, Shufang,Yin, Hong. 2016

[6]Streptomyces tritici sp nov., a novel actinomycete isolated from rhizosphere soil of wheat (Triticum aestivum L.). Shi, Linlin,Li, Wenchao,Wang, Jiabin,Wang, Han,Tian, Yuanyuan,Xiang, Wensheng,Wang, Xiangjing,Xiang, Wensheng. 2018

[7]Paenibacillus thermophilus sp nov., a novel bacterium isolated from a sediment of hot spring in Fujian province, China. Zhou, Yu,Gao, Sheng,Yang, Ling-Ling,He, Jie,Zhang, Yun-Jiao,Tang, Shu-Kun,Li, Wen-Jun,Gao, Sheng,Yang, Ling-Ling,He, Jie,Zhang, Yun-Jiao,Tang, Shu-Kun,Li, Wen-Jun,Wei, Da-Qiao,Huang, Xing,Li, Wen-Jun. 2012

[8]Deep sequencing reveals high bacterial diversity and phylogenetic novelty in pit mud from Luzhou Laojiao cellars for Chinese strong-flavor Baijiu. Tang, Yu-Ming,Guo, Xiao-Jiao,Tian, Xin-Hui,Liu, Ying,Yao, Wan-Chun,Ren, Dao-Qun,Liu, Mao-Ke,Zhao, Ke,Zhang, Xiao-Ping,Deng, Bo. 2017

[9]Molecular survey and characterization of a novel Anaplasma species closely related to Anaplasma capra in ticks, northwestern China. Yang, Jifei,Liu, Zhijie,Niu, Qingli,Liu, Junlong,Han, Rong,Liu, Guangyuan,Luo, Jianxun,Yin, Hong,Yin, Hong,Shi, Yaoxu. 2016

[10]Illumina-based analysis of bacterial diversity related to halophytes Salicornia europaea and Sueada aralocaspica. Sh, Ying-wu,Lou, Kai,Li, Chun,Wang, Lei,Zhao, Zhen-yong,Zhao, Shuai,Tian, Chang-yan. 2015

[11]Anaplasma phagocytophilum in sheep and goats in central and southeastern China. Yang, Jifei,Liu, Zhijie,Niu, Qingli,Liu, Junlong,Han, Rong,Guan, Guiquan,Li, Youquan,Liu, Guangyuan,Luo, Jianxun,Yin, Hong,Yin, Hong. 2016

[12]Diversity of prokaryotes associated with soils around coal-fire gas vents in MaNasi county of Xinjiang, China. Lou, Kai,Zhang, Tao,Xu, Jianhua,Zeng, Jun. 2013

[13]Phylogenetic analysis of epibacterial communities on the surfaces of four red macroalgae. Wu Hongqing,Liu Min,Zhang Wuchang,Xiao Tian,Wu Hongqing,Wu Hongqing,Liu Min. 2014

[14]Actinomadura jiaoheensis sp nov and Actinomadura sporangiiformans sp nov., two novel actinomycetes isolated from muddy soil and emended description of the genus Actinomadura. Zhao, Junwei,Guo, Lifeng,Sun, Pengyu,Han, Chuanyu,Bai, Lu,Liu, Chongxi,Li, Yunxi,Xiang, Wensheng,Wang, Xiangjing,Xiang, Wensheng.

[15]Streptomyces formicae sp nov., a novel actinomycete isolated from the head of Camponotus japonicus Mayr. Liu, Chongxi,Guo, Lifeng,Piao, Chenyu,Li, Zhilei,Li, Jiansong,Jia, Feiyu,Wang, Xiangjing,Xiang, Wensheng,Xiang, Wensheng.

[16]Micromonospora violae sp nov., isolated from a root of Viola philippica Car. Liu, Hui,Zhang, Xinhui,Wang, Shurui,Liu, Chongxi,Wang, Xiangjing,Xiang, Wensheng,Yu, Chao,Xiang, Wensheng.

[17]Kribbella qitaiheensis sp nov., a novel actinomycete isolated from soil. Zhao, Junwei,Liu, Chongxi,Han, Chuanyu,Bai, Lu,Sun, Pengyu,Li, Jiansong,Wang, Xiangjing,Xiang, Wensheng,Xiang, Wensheng.

[18]Lentibacillus amyloliquefaciens sp nov., a halophilic bacterium isolated from saline sediment sample. Wang, Jing-Li,Wang, Yan-Wei,Guo, Xiang,He, Ming-Xiong,Ma, Ke-Dong,Wang, Hui-Min,Zhou, Shan,Chen, Xiao-Rong,Kong, De-Long,Ruan, Zhi-Yong.

[19]Avoidance and Potential Remedy Solutions of Chimeras in Reconstructing the Phylogeny of Aphids Using the 16S rRNA Gene of Buchnera: A Case in Lachninae (Hemiptera). Chen, Rui,Wang, Zhe,Chen, Jing,Qiao, Ge-Xia,Chen, Rui,Wang, Zhe. 2015

[20]Catellatospora vulcania sp nov and Catellatospora paridis sp nov., two novel actinobacteria isolated from volcanic sediment and the rhizosphere of Paris polyphylla. Jia, Feiyu,Guo, Siyu,Shen, Yue,Gao, Meiyue,Liu, Chongxi,Zhou, Shuyu,Li, Jiansong,Guan, Xuejiao,Wang, Xiangjing,Xiang, Wensheng,Xiang, Wensheng.

作者其他论文 更多>>

微信小程序