Molecular genetic identification of Wuzhishan ant chicken, a newly discovered resource in China

文献类型： 外文期刊

第一作者： Gu, Lihong

作者： Gu, Lihong;Zheng, Xinli;Chao, Zhe;He, Zhongchun;Wu, Fanghu;Zhang, Xiaohui;Shang, Yuanyuan;Chen, Yanmin;Liu, Xiangxiang;Mo, Shuhui;Chen, Youyi;Lu, Lizhi;Wei, Dong;Wei, Sheng;Xu, Tieshan

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关键词： Wuzhishan ant chicken; genetic diversity; whole-genome resequencing; genetic structure; genetic resource

期刊名称：FRONTIERS IN VETERINARY SCIENCE （ 影响因子：2.6； 五年影响因子：3.1 ）

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年卷期： 2024 年 11 卷

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收录情况： SCI

摘要： Introduction The Wuzhishan ant (MY) chicken exhibits significant differences from other chicken breeds. However, the molecular genetic relationship between the MY breed and other chicken breeds has not been assessed.Methods Whole-genome resequencing was used to compare genetic diversity, nucleotide diversity, the fixation index, the linkage disequilibrium coefficient, and phylogenetic tree relationships between the MY breed and the Wenchang (WC), Danzhou (DZ), Bawangling (BW), and Longsheng Feng (LF) breeds.Results A total of 21,586,378 singlenucleotide polymorphisms and 4,253,341 insertions/deletions were screened out among the five breeds. The MY breed had the second highest genomic genetic diversity and nucleotide diversity and the lowest LD coefficient among the five breeds. Moreover, the phylogenetic tree analysis showed that individual birds of each breed clustered together with those of their respective breeds.Discussion Our data indicated that the MY breed is distinct from the other breeds and can be considered a new genetic resource.

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