Haplotype-resolved genome assembly provides insights into evolutionary history of the tea plant Camellia sinensis

文献类型： 外文期刊

第一作者： Zhang, Xingtan

作者： Zhang, Xingtan;Chen, Shuai;Shi, Longqing;Zhao, Qian;Vasseur, Liette;Ma, Dongna;Shi, Yan;Wang, Haifeng;Wei, Liufeng;Hu, Guiping;He, Haifang;You, Minsheng;Zhang, Xingtan;Chen, Shuai;Shi, Longqing;Chen, Shuai;Zhang, Shengcheng;Wang, Yibin;Yu, Jiaxin;Liao, Zhenyang;Xu, Xindan;Qi, Rui;Wang, Wenling;Ma, Yunran;Ma, Xiaokai;Lin, Jing;Ma, Yaying;Li, Ruoyu;Tang, Haibao;Shi, Longqing;Zhao, Qian;Vasseur, Liette;You, Minsheng;Gong, Daping;Zhan, Dongliang;Vasseur, Liette;Wang, Pengjie;Ye, Naixing;Kong, Xiangrui;Hu, Guiping;Zhang, Lin;Ming, Ray;Wang, Gang

作者机构：

期刊名称：NATURE GENETICS （ 影响因子：38.33； 五年影响因子：36.431 ）

ISSN： 1061-4036

年卷期： 2021 年 53 卷 8 期

页码：

收录情况： SCI

摘要： Haplotype-resolved genome assembly of an Oolong tea cultivar Tieguanyin and population genomic analyses of 190 Camellia accessions provide insights into the evolutionary history of the tea plant Camellia sinensis. Tea is an important global beverage crop and is largely clonally propagated. Despite previous studies on the species, its genetic and evolutionary history deserves further research. Here, we present a haplotype-resolved assembly of an Oolong tea cultivar, Tieguanyin. Analysis of allele-specific expression suggests a potential mechanism in response to mutation load during long-term clonal propagation. Population genomic analysis using 190 Camellia accessions uncovered independent evolutionary histories and parallel domestication in two widely cultivated varieties, var. sinensis and var. assamica. It also revealed extensive intra- and interspecific introgressions contributing to genetic diversity in modern cultivars. Strong signatures of selection were associated with biosynthetic and metabolic pathways that contribute to flavor characteristics as well as genes likely involved in the Green Revolution in the tea industry. Our results offer genetic and molecular insights into the evolutionary history of Camellia sinensis and provide genomic resources to further facilitate gene editing to enhance desirable traits in tea crops.

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