The developments and prospects of plant super-pangenomes: Demands, approaches, and applications

文献类型： 外文期刊

第一作者： He, Wenchuang

作者： He, Wenchuang;Li, Xiaoxia;Qian, Qian;Shang, Lianguang;Qian, Qian;Shang, Lianguang;Qian, Qian;Qian, Qian;Shang, Lianguang

作者机构：

关键词： pangenomics; super-pangenome; plant; methodology; molecular breeding

期刊名称：PLANT COMMUNICATIONS （ 影响因子：11.6； 五年影响因子：11.8 ）

ISSN： 2590-3462

年卷期： 2025 年 6 卷 2 期

页码：

收录情况： SCI

摘要： By integrating genomes from different accessions, pangenomes provide a more comprehensive and reference-bias-free representation of genetic information within a population compared to a single refer- ence genome. With the rapid accumulation of genomic sequencing data and the expanding scope of plant research, plant pangenomics has gradually evolved from single-species to multi-species studies. This shift has given rise to the concept of a super-pangenome that covers all genomic sequences within a genus- level taxonomic group. By incorporating both cultivated and wild species, the super-pangenome has greatly enhanced the resolution of research in various areas such as plant genetic diversity, evolution, domestication, and molecular breeding. In this review, we present a comprehensive overview of the plant super-pangenome, emphasizing its development requirements, construction strategies, potential applica- tions, and notable achievements. We also highlight the distinctive advantages and promising prospects of super-pangenomes while addressing current challenges and future directions.

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