文献类型： 外文期刊
第一作者： Xie, Lingjuan
作者： Xie, Lingjuan;Wu, Dongya;Fang, Yu;Ye, Chuyu;Fan, Longjiang;Xie, Lingjuan;Wu, Dongya;Fang, Yu;Ye, Chuyu;Fan, Longjiang;Xie, Lingjuan;Fan, Longjiang;Fang, Yu;Zhu, Qian-Hao;Wei, Xinghua
作者机构： Zhejiang Univ, Inst Crop Sci, Hangzhou 310058, Peoples R China;Zhejiang Univ, Inst Bioinformat, Hangzhou 310058, Peoples R China;Zhejiang Univ, Shandong Linyi Inst Modern Agr, Linyi 310014, Peoples R China;Shanghai ZKW Mol Breeding Technol Co Ltd, Shanghai 200234, Peoples R China;CSIRO Agr & Food, Black Mt Labs, Canberra, ACT 2601, Australia;Chinese Acad Agr Sci, China Natl Rice Res Inst, Hangzhou 311401, Peoples R China
关键词： red rice; population genomics; pericarp color; re-domestication; divergence time
期刊名称：PLANT COMMUNICATIONS （ 2022影响因子：10.5； 五年影响因子：10.5 ）
ISSN： 2590-3462
年卷期： 2024 年 5 卷 3 期
收录情况： SCI
摘要： Pigmented rice stands out for its nutritional value and is gaining more and more attention. Wild rice, domesticated red rice, and weedy rice all have a red pericarp and a comprehensive genetic background in terms of the red-pericarp phenotype. We performed population genetic analyses using 5104 worldwide rice accessions, including 2794 accessions with red or black pericarps, 85 of which were newly sequenced in this study. The results suggested an evolutionary trajectory of red landraces originating from wild rice, and the split times of cultivated red and white rice populations were estimated to be within the past 3500 years. Cultivated red rice was found to feralize to weedy rice, and weedy rice could be further re-domesticated to cultivated red rice. A genome-wide association study based on the 2794 accessions with pigmented pericarps revealed several new candidate genes associated with the red-pericarp trait for further functional characterization. Our results provide genomic evidence for the origin of pigmented rice and a valuable genomic resource for genetic investigation and breeding of pigmented rice.
- 相关文献
作者其他论文 更多>>
-
Proteome-metabolome profiling of wax gland complex reveals functional changes in honeybee, Apis mellifera L.
作者：Xu, Rumeng;Ma, Beibei;Yang, Yiying;Dong, Xuancheng;Li, Jianke;Xu, Xiang;Fang, Yu
关键词：
-
Transcription factor OsbZIP10 modulates rice grain quality by regulating OsGIF1
作者：Jiang, Meng;Bai, Jianjiang;Tang, Jianhao;Yang, Ruifang;Jiang, Meng;Wang, Qing;Li, Ruiqing;Jiang, Meng;Song, Yue;Chen, Jiale;Zhang, Huali;Zhang, Huali;Wang, Qing;Fotopoulos, Vasileios;Zhu, Qian-Hao
关键词：grain filling; amylose; seed formation; AGPS1; natural variation; starch synthesis
-
A reference genome of Commelinales provides insights into the commelinids evolution and global spread of water hyacinth (Pontederia crassipes)
作者：Huang, Yujie;Xie, Lingjuan;Shang, Nianmin;Wu, Dongya;Ye, Chuyu;Fan, Longjiang;Huang, Yujie;Xie, Lingjuan;Shang, Nianmin;Wu, Dongya;Ye, Chuyu;Fan, Longjiang;Huang, Yujie;Fan, Longjiang;Guo, Longbiao;Rudell, Eduardo Carlos;Junior, Aldo Merotto;Okada, Kazunori;Zhu, Qian-Hao;Song, Beng-Kah;Cai, Daguang;Bai, Lianyang
关键词：Pontederia crassipes or Eichhornia crassipes; Commelinales; reference genome; phylogeny of the commelinids; genetic diversity; karyotypes
-
VdPT1 Encoding a Neutral Trehalase of Verticillium dahliae Is Required for Growth and Virulence of the Pathogen
作者：Chen, Lihua;Ma, Xiaohu;Sun, Tiange;Li, Yongtai;Liu, Feng;Zhang, Xinyu;Sun, Jie;Li, Yanjun;Zhu, Qian-Hao;Feng, Hongjie
关键词：cotton; RNA-sequencing; RNA-seq; trehalase; Verticillium dahliae
-
Soil Fertility and Bacterial Community Composition in Response to the Composting of Biochar-Amended Chicken Manure
作者：Chen, Longjun;Zhang, Hui;Jia, Xianbo;Fang, Yu;Lin, Chenqiang
关键词：biochar composting products; Chinese cabbage; soil properties; bacterial community structure
-
Development of a "Signal-On" Fluorescent Aptasensor for Highly Selective and Sensitive Detection of ZEN in Cereal Products Using Nitrogen-Doped Carbon Dots Based on the Inner Filter Effect
作者：Sun, Qi;Zhou, Yuting;Ma, Miaomiao;Zhang, Fuyan;Li, Shuang;Chen, Zhuoer;Fang, Yu;Le, Tao;Xing, Fuguo;Xing, Fuguo
关键词：zearalenone; nitrogen-doped carbon dots; fluorescent aptasensor; detection mechanism; cereal products
-
Identification of pine wood nematode (Bursaphelenchus xylophilus) loading response genes in Japanese pine sawyer (Monochamus alternatus) through comparative genomics and transcriptomics
作者：Lin, Guifang;Su, Jun;Zou, Xiangying;Jia, Jiayu;Lin, Guifang;Su, Jun;Zhu, Tengfei;Cai, Shouping;Su, Shunde;He, Yiman;Li, Jian;Fang, Yu
关键词：pine wilt disease; Japanese pine sawyer (Monochamus alternatus); pine wood nematode (Bursaphelenchus xylophilus); PWN carrying amount; fatty acid beta-oxidation; genetic mechanism
