Genome-wide identification and evolutionary analyses of bZIP transcription factors in wheat and its relatives and expression profiles of anther development related TabZIP genes

文献类型： 外文期刊

第一作者： Li, Xueyin

作者： Li, Xueyin;Gao, Shiqing;Tang, Yimiao;Zhang, Fengjie;Feng, Biane;Fang, Zhaofeng;Zhao, Changping;Li, Xueyin;Ma, Lingjian;Li, Lei;Zhang, Fengjie;Feng, Biane

作者机构：

关键词： Basic leucine zipper (bZIP);Common wheat;Orthology analyses;Gene expression;Anther development;Over-dominance

期刊名称：BMC GENOMICS （ 影响因子：3.969； 五年影响因子：4.478 ）

ISSN： 1471-2164

年卷期： 2015 年 16 卷

页码：

收录情况： SCI

摘要： Background: Among the largest and most diverse transcription factor families in plants, basic leucine zipper (bZIP) family participate in regulating various processes, including floral induction and development, stress and hormone signaling, photomorphogenesis, seed maturation and germination, and pathogen defense. Although common wheat (Triticum aestivum L.) is one of the most widely cultivated and consumed food crops in the world, there is no comprehensive analysis of bZIPs in wheat, especially those involved in anther development. Previous studies have demonstrated wheat, T. urartu, Ae. tauschii, barley and Brachypodium are evolutionarily close in Gramineae family, however, the real evolutionary relationship still remains mysterious. Results: In this study, 187 bZIP family genes were comprehensively identified from current wheat genome. 98, 96 and 107 members of bZIP family were also identified from the genomes of T. urartu, Ae. tauschii and barley, respectively. Orthology analyses suggested 69.4 % of TubZIPs were orthologous to 68.8 % of AetbZIPs and wheat had many more in-paralogs in the bZIP family than its relatives. It was deduced wheat had a closer phylogenetic relationship with barley and Brachypodium than T. urartu and Ae. tauschii. bZIP proteins in wheat, T. urartu and Ae. tauschii were divided into 14 subgroups based on phylogenetic analyses. Using Affymetrix microarray data, 48 differentially expressed TabZIP genes were identified to be related to anther development from comparison between the male sterility line and the restorer line. Genes with close evolutionary relationship tended to share similar gene structures. 15 of 23 selected TabZIP genes contained LTR elements in their promoter regions. Expression of 21 among these 23 TabZIP genes were obviously responsive to low temperature. These 23 TabZIP genes all exhibited distinct tissue-specific expression pattern. Among them, 11 TabZIP genes were predominantly expressed in anther and most of them showed over-dominance expression mode in the cross combination TY806 x BS366. Conclusions: The genome-wide identification provided an overall insight of bZIP gene family in wheat and its relatives. The evolutionary relationship of wheat and its relatives was proposed based on orthology analyses. Microarray and expression analyses suggested the potential involvement of bZIP genes in anther development and facilitated selection of anther development related gene for further functional characterization.

分类号：

  • 相关文献

[1]Global analysis of gene expression in flower buds of Ms-cd1 Brassica oleracea conferring male sterility by using an Arabidopsis microarray. Bonnema, Guusje,Kang, Jungen,Zhang, Guoyu,Fang, Zhiyuan,Wang, Xiaowu.

[2]Cloning and Characterization of TaTGW-7A Gene Associated with Grain Weight in Wheat via SLAF-seq-BSA. Hu, Ming-Jian,Zhang, Hai-Ping,Liu, Kai,Cao, Jia-Jia,Wang, Sheng-Xing,Jiang, Hao,Wu, Zeng-Yun,Lu, Jie,Zhu, Xiao F.,Xia, Xian-Chun,Sun, Gen-Lou,Ma, Chuan-Xi,Chang, Cheng,Xia, Xian-Chun,Sun, Gen-Lou. 2016

[3]Down-Regulation of OsEMF2b Caused Semi-sterility Due to Anther and Pollen Development Defects in Rice. Zhang, Siwei,Wang, Geling,Fan, Shijun,Li, Meng,Chen, Weilan,Tu, Bin,Wang, Yuping,Ma, Bingtian,Li, Shigui,Qin, Peng,Deng, Luchang,Tan, Jun,Chen, Weilan,Tu, Bin,Wang, Yuping,Ma, Bingtian,Li, Shigui,Qin, Peng. 2017

[4]Arabidopsis C3H14 and C3H15 have overlapping roles in the regulation of secondary wall thickening and anther development. Chai, Guohua,Zhu, Ming,Yu, Li,Qi, Guang,Tang, Xianfeng,Wang, Zengguang,Cao, Yingping,Yu, Changjiang,Zhou, Gongke,Kong, Yingzhen.

[5]Pollen Semi-Sterility1 Encodes a Kinesin-1-Like Protein Important for Male Meiosis, Anther Dehiscence, and Fertility in Rice. Zhou, Shirong,Wang, Yang,Li, Wanchang,Zhao, Zhigang,Ren, Yulong,Wang, Yong,Jiang, Ling,Liu, Linglong,Wan, Jianmin,Zhou, Shirong,Gu, Suhai,Lin, Qibing,Wang, Dan,Su, Ning,Zhang, Xin,Cheng, Zhijun,Lei, Cailin,Wang, Jiulin,Guo, Xiuping,Wu, Fuqing,Wang, Haiyang,Wan, Jianmin,Ikehashi, Hiroshi.

[6]Cytological and molecular characterization of a new cytoplasmic male sterility in rapeseed. Wei, W. L.,Wang, H. Z.,Liu, G. H..

[7]Cloning and Characterization of a Somatic Embryogenesis Receptor-Like Kinase Gene in Cotton (Gossypium hirsutum). Shi Ya-li,Zhang Rui,Wu Xiao-ping,Meng Zhi-gang,Guo San-dui. 2012

[8]Upregulation of the AT-hook DNA binding gene BoMF2 in OguCMS anthers of Brassica oleracea suggests that it encodes a transcriptional regulatory factor for anther development. Kang, Jungen,Guo, Yingying,Chen, Yujuan,Li, Hailong,Zhang, Lei,Liu, Haixia,Kang, Jungen,Guo, Yingying,Chen, Yujuan,Li, Hailong,Zhang, Lei,Liu, Haixia.

[9]Quantitative trait loci mapping of adult-plant resistance to powdery mildew in Chinese wheat cultivar Lumai 21. Caixia Lan,Xiaowen Ni,Jun Yan,Yong Zhang,Xianchun Xia,Xinmin Chen,Zhonghu He.

[10]Diversity, distribution of Puroindoline genes and their effect on kernel hardness in a diverse panel of Chinese wheat germplasm. Ma, Xiaoling,Sajjad, Muhammad,Wang, Jing,Yang, Wenlong,Sun, Jiazhu,Li, Xin,Zhang, Aimin,Liu, Dongcheng,Ma, Xiaoling,Sajjad, Muhammad,Wang, Jing. 2017

[11]Haplotype, molecular marker and phenotype effects associated with mineral nutrient and grain size traits of TaGS1 a in wheat. Guo, Ying,Sun, Jinjie,Zhang, Guizhi,Wang, Yingying,Kong, Fanmei,Zhao, Yan,Li, Sishen,Guo, Ying,Wang, Yingying. 2013

[12]Mineral element distributions in milling fractions of Chinese wheats. Tang, Jianwei,He, Zhonghu,Zhang, Yong,Tang, Jianwei,Qu, Yanying,Zou, Chunqin,Shi, Rongli,He, Zhonghu,Ortiz-Monasterio, Ivan. 2008

[13]Characterization of genome and chromosomes in octoploid wheat-wheatgrass amphiploid Zhong 2 using fluorescence in situ hybridization and chromosome pairing analysis. Gao, Z,Han, FP,He, MY,Ma, YZ,Xin, ZY. 1999

[14]Molecular mapping of leaf rust resistance gene LrBi16 in Chinese wheat cultivar Bimai 16. Zhang, Hai,Li, Xing,Li, Zaifeng,Liu, Daqun,Xia, Xianchun,He, Zhonghu,He, Zhonghu. 2011

[15]Cytological and molecular analysis of wheat - Agropyron cristatum translocation lines with 6P chromosome fragments conferring superior agronomic traits in common wheat. Song, Liqiang,Lu, Yuqing,Zhang, Jinpeng,Pan, Cuili,Yang, Xinming,Li, Xiuquan,Liu, Weihua,Li, Lihui.

[16]The adult plant rust resistance loci Lr34/Yr18 and Lr46/Yr29 are important determinants of partial resistance to powdery mildew in bread wheat line Saar. Lillemo, M.,Asalf, B.,Bjornstad, A.,Singh, R. P.,Huerta-Espino, J.,Chen, X. M.,He, Z. H..

[17]Potassium (K) effects and QTL mapping for K efficiency traits at seedling and adult stages in wheat. Kong, Fan-Mei,Guo, Ying,Liang, Xue,Wu, Chun-Hong,Wang, Ying-Ying,Zhao, Yan,Li, Si-Shen,Guo, Ying,Wang, Ying-Ying.

[18]QTL mapping of grain arabinoxylan contents in common wheat using a recombinant inbred line population. Li Yang,Dehui Zhao,Jun Yan,Yelun Zhang,Xianchun Xia,Yubing Tian,Zhonghu He,Yong Zhang.

[19]Physical Localization of a Locus from Agropyron cristatum Conferring Resistance to Stripe Rust in Common Wheat. Zhang, Zhi,Han, Haiming,Zhou, Shenghui,Zhang, Jinpeng,Yang, Xinming,Li, Xiuquan,Liu, Weihua,Li, Lihui,Song, Liqiang. 2017

[20]The impact of modern plant breeding on dominant Chinese wheat cultivars (Triticum aestivum L.) revealed by SSR and functional markers. Meng, Lingzhi,Xiang, Chao,Liu, Hongwei,Yang, Li,Li, Hongjie,Zhang, Hongjun,Zhou, Yang,Mai, Chunyan,Wei, Yunliang,Yu, Liqiang. 2018

作者其他论文 更多>>

微信小程序