Transcriptome shock in an interspecific F1 triploid hybrid of Oryza revealed by RNA sequencing

文献类型： 外文期刊

第一作者： Wu, Ying

作者： Wu, Ying;Sun, Yue;Wang, Xutong;Sun, Shuai;Shen, Kun;Wang, Jie;Jiang, Tingting;Xu, Chunming;Liu, Bao;Lin, Xiuyun;Zhong, Silin

作者机构：

关键词： Cis- and trans-regulation;homeolog expression rewiring;interspecific hybrid;Oryza;promoter divergence;transcriptome shock

期刊名称：JOURNAL OF INTEGRATIVE PLANT BIOLOGY （ 影响因子：7.061； 五年影响因子：6.002 ）

ISSN： 1672-9072

年卷期： 2016 年 58 卷 2 期

页码：

收录情况： SCI

摘要： Interspecific hybridization is a driving force in evolution and speciation of higher plants. Interspecific hybridization often induces immediate and saltational changes in gene expression, a phenomenon collectively termed transcriptome shock. Although transcriptome shock has been reported in various plant and animal taxa, the extent and pattern of shock-induced expression changes are often highly idiosyncratic, and hence entails additional investigations. Here, we produced a set of interspecific F1 triploid hybrid plants between Oryza sativa, ssp. japonica (2n=2x=24, genome AA) and the tetraploid form of O. punctata (2n=4x=48, genome, BBCC), and conducted RNA-seq transcriptome profiling of the hybrids and their exact parental plants. We analyzed both homeolog expression bias and overall gene expression level difference in the hybrids relative to the in silico hybrids (parental mixtures). We found that approximately 16% (2,541) of the 16,112 expressed genes in leaf tissue of the F1 hybrids showed nonadditive expression, which were specifically enriched in photosynthesis-related pathways. Interestingly, changes in the maternal homeolog expression, including non-stochastic silencing, were the major causes for altered homeolog expression partitioning in the F1 hybrids. Our findings have provided further insights into the transcriptome response to interspecific hybridization and heterosis.

分类号：

  • 相关文献

[1]A 90-day safety study of genetically modified rice expressing rhIGF-1 protein in C57BL/6J rats. Tang, Maoxue,Cheng, Wenke,Qian, Lili,Yang, Shulin,Cui, Wentao,Li, Kui,Tang, Maoxue,Cheng, Wenke,Qian, Lili,Yang, Shulin,Cui, Wentao,Li, Kui,Xie, Tingting,Yang, Daichang.

[2]Transcriptome profiling and comparison of maize ear heterosis during the spikelet and floret differentiation stages. Hu, Xiaojiao,Wang, Hongwu,Diao, Xizhou,Liu, Zhifang,Li, Kun,Wu, Yujin,Liang, Qianjin,Wang, Hui,Huang, Changling. 2016

[3]Assessing genetic divergence in interspecific hybrids of Aechmea gomosepala and A-recurvata var. recurvata using inflorescence characteristics and sequence-related amplified polymorphism markers. Zhang, F.,Ge, Y. Y.,Wang, W. Y.,Shen, X. L.,Yu, X. Y.. 2012

[4]Identification of interspecific heterotic loci associated with agronomic traits in rice introgression lines carrying genomic fragments of Oryza glaberrima. Nassirou, Tondi Yacouba,He, Wenchuang,Chen, Caijin,Nsabiyumva, Athanase,Dong, Xilong,Yin, Yilong,Rao, Quanqin,Zhou, Wei,Shi, Han,Zhao, Wubin,Jin, Deming,Nevame, Adedze Y. M..

[5]Caucasian clover (Trifolium ambiguum Bieb.) x white clover (T. repens L.) - interspecific hybrids developed through tissue culture. Huang, Fan,Wang, Mingjiu,Li, Zhiyong,Huang, Fan,Wang, Mingjiu. 2017

[6]Detection of epistatic interactions of three QTLs for heading date in rice using single segment substitution lines. Ding, Han-Feng,Liu, Xu,Li, Run-Fang,Wang, Wen-Ying,Zhang, Y.,Zhang, Xiao-Dong,Yao, Fang-Yin,Li, Guang-Xian,Jiang, Ming-Song,Ding, Han-Feng.

[7]Genetic differentiation of wild relatives of rice as assessed by RFLP analysis. Lu, BR,Zheng, KL,Qian, HR,Zhuang, JY. 2002

[8]Photoprotective effects of high level expression Of C(4) phosphoenolpyruvate carboxylase in transgenic rice during photoinhibition. Jiao, DM,Li, X,Ji, BH. 2005

[9]Genomic variation of the rice Rim2/Hipa superfamily and dendrogram and fingerprinting analysis of rice germplasm based on Rim2/Hipa paralog display. Tian, PF,Wang, JJ,Wu, G,Li, Q,Lu, BR,He, ZH. 2006

[10]In rice, Oryzalin and abscisic acid differentially affect tubulin mRNA and protein levels. Giani, S,Qin, XQ,Faoro, F,Breviario, D. 1998

[11]Rapid and Recent Evolution of LTR Retrotransposons Drives Rice Genome Evolution During the Speciation of AA-Genome Oryza Species. Zhang, Qun-Jie,Gao, Li-Zhi,Zhang, Qun-Jie,Zhang, Qun-Jie. 2017

[12]Exogenous nitric oxide enhances cadmium tolerance of rice by increasing pectin and hemicellulose contents in root cell wall. Xiong, Jie,An, Lingyao,Lu, Han,Zhu, Cheng,Xiong, Jie.

[13]Antagonistic HLH/bHLH Transcription Factors Mediate Brassinosteroid Regulation of Cell Elongation and Plant Development in Rice and Arabidopsis. Zhang, Li-Ying,Bai, Ming-Yi,Zhu, Jia-Ying,Wang, Hao,Wang, Wenfei,Zhao, Jun,Yang, Hongjuan,Xu, Yunyuan,Lin, Wen-Hui,Chong, Kang,Wang, Zhi-Yong,Zhang, Li-Ying,Zhu, Jia-Ying,Wang, Hao,Wang, Wenfei,Zhao, Jun,Bai, Ming-Yi,Sun, Yu,Wang, Zhi-Yong,Wu, Jinxia,Zhang, Zhiguo,Sun, Xuehui,Lu, Tiegang,Kim, Soo-Hwan,Fujioka, Shozo.

[14]Impact of phosphorus supply on root exudation, aerenchyma formation and methane emission of rice plants. Lu, Y,Wassmann, R,Neue, HU,Huang, C.

[15]POLYMORPHISM AND GENETIC RELATEDNESS AMONG WILD AND CULTIVATED RICE SPECIES DETERMINED BY AP-PCR ANALYSIS. YI, QM,DENG, WG,XIA, ZP,PANG, HH.

[16]SHALLOT-LIKE1 Is a KANADI Transcription Factor That Modulates Rice Leaf Rolling by Regulating Leaf Abaxial Cell Development. Xu, Qian,Xue, Hong-Wei,Zhang, Guang-Heng,Zhu, Xu-Dong,Qian, Qian.

[17]Rice ragged stunt oryzavirus: role of the viral spike protein in transmission by the insect vector. Zhou, GY,Lu, XB,Lu, HJ,Lei, JL,Chen, SX,Gong, ZX.

[18]Photosynthetic characteristics of hybrid rice with phosphoenolpyruvate carboxylase gene. Ling, L.,Zhang, B. J.,Jiao, D. M.. 2007

[19]Short panicle1 encodes a putative PTR family transporter and determines rice panicle size. Li, Shengben,Fu, Zhiming,Zeng, Dali,Meng, Xiangbing,Zhang, Jian,Li, Jiayang,Wang, Yonghong,Li, Shengben,Fu, Zhiming,Zeng, Dali,Meng, Xiangbing,Zhang, Jian,Li, Jiayang,Wang, Yonghong,Qian, Qian,Zeng, Dali,Zhu, Xudong,Kyozuka, Junko,Maekawa, Masahiko.

[20]Drought-induced proline accumulation is uninvolved with increased nitric oxide, which alleviates drought stress by decreasing transpiration in rice. Xiong, Jie,Fu, Guanfu,Yang, Yongjie,Tao, Longxing,Zhang, Long,Zhu, Cheng.

作者其他论文 更多>>

微信小程序