Genome-Wide Identification and Analysis of the VQ Motif-Containing Protein Family in Chinese Cabbage (Brassica rapa L. ssp Pekinensis)

文献类型： 外文期刊

第一作者： Zhang, Gaoyuan

作者： Zhang, Gaoyuan;Zhang, Jiannong;Wang, Fengde;Li, Jingjuan;Ding, Qian;Zhang, Yihui;Li, Huayin;Gao, Jianwei

作者机构： Gansu Agr Univ, Coll Hort, Lanzhou 730070, Peoples R China;Shandong Acad Agr Sci, Inst Vegetables & Flowers, Shandong Key Lab Greenhouse Vegetable Biol, Natl Vegetable Improvement Ctr,Shandong Branch, Jinan 250100, Peoples R China;Shandong Acad Agr Sci, Inst Vegetables

关键词： VQ motif-containing proteins;Chinese cabbage;expression patterns

期刊名称：INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES （ 影响因子：5.923； 五年影响因子：6.132 ）

ISSN： 1422-0067

年卷期： 2015 年 16 卷 12 期

页码：

收录情况： SCI

摘要： Previous studies have showed that the VQ motif-containing proteins in Arabidopsis thaliana and Oryza sativa play an important role in plant growth, development, and stress responses. However, little is known about the functions of the VQ genes in Brassica rapa (Chinese cabbage). In this study, we performed genome-wide identification, characterization, and expression analysis of the VQ genes in Chinese cabbage, especially under adverse environment. We identified 57 VQ genes and classified them into seven subgroups (I-VII), which were dispersedly distributed on chromosomes 1 to 10. The expansion of these genes mainly contributed to segmental and tandem duplication. Fifty-four VQ genes contained no introns and 50 VQ proteins were less than 300 amino acids in length. Quantitative real-time PCR showed that the VQ genes were differentially expressed in various tissues and during different abiotic stresses and plant hormone treatments. This study provides a comprehensive overview of Chinese cabbage VQ genes and will benefit the molecular breeding for resistance to stresses and disease, as well as further studies on the biological functions of the VQ proteins.

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