Draft genome sequence of Halomonas lutea strain YIM 91125(T) (DSM 23508(T)) isolated from the alkaline Lake Ebinur in Northwest China

文献类型： 外文期刊

第一作者： Gao, Xiao-Yang

作者： Gao, Xiao-Yang;Li, Wen-Jun;Zhi, Xiao-Yang;Li, Hong-Wei;Li, Wen-Jun;Zhi, Xiao-Yang;Li, Hong-Wei;Li, Wen-Jun;Lapidus, Alla;Lapidus, Alla;Han, James;Haynes, Matthew;Lobos, Elizabeth;Huntemann, Marcel;Pati, Amrita;Ivanova, Natalia N.;Mavromatis, Konstantinos;Woyke, Tanja;Kyrpides, Nikos C.;Markowitz, Victor;Tindall, Brian J.;Klenk, Hans-Peter;Kyrpides, Nikos C.;Li, Hong-Wei;Zhou, Yu;Gao, Xiao-Yang;Klenk, Hans-Peter

作者机构：

关键词： Halomonas lutea;Aerobic;Gram-negative;Chemoorganotrophic;Moderately halophilic;Lake Ebinur

期刊名称：STANDARDS IN GENOMIC SCIENCES （ 影响因子：1.339； 五年影响因子：1.656 ）

ISSN： 1944-3277

年卷期： 2015 年 10 卷

页码：

收录情况： SCI

摘要： Species of the genus Halomonas are halophilic and their flexible adaption to changes of salinity and temperature brings considerable potential biotechnology applications, such as degradation of organic pollutants and enzyme production. The type strain Halomonas lutea YIM 91125T was isolated from a hypersaline lake in China. The genome of strain YIM 91125T becomes the twelfth species sequenced in Halomonas, and the thirteenth species sequenced in Halomonadaceae. We described the features of H. lutea YIM 91125T, together with the high quality draft genome sequence and annotation of its type strain. The 4,533,090 bp long genome of strain YIM 91125T with its 4,284 protein-coding and 84 RNA genes is a part of Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes (KMG-I) project. From the viewpoint of comparative genomics, H. lutea has a larger genome size and more specific genes, which indicated acquisition of function bringing better adaption to its environment. DDH analysis demonstrated that H. lutea is a distinctive species, and halophilic features and nitrogen metabolism related genes were discovered in its genome.

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