Analysis on differentially expressed genes in watermelon rind color based on RNA-Seq

文献类型: 外文期刊

第一作者: Wu Cai-jun

作者: Wu Cai-jun;Yang Kan-kan;Liang Zhi-huai

作者机构:

关键词: watermelon;rind color;transcriptome sequencing;differentially expressed genes

期刊名称:JOURNAL OF CENTRAL SOUTH UNIVERSITY ( 影响因子:1.716; 五年影响因子:1.475 )

ISSN: 2095-2899

年卷期: 2016 年 23 卷 11 期

页码:

收录情况: SCI

摘要: In order to screen the genes controlling watermelon rind color and luster, the experiment was carried out with yellow watermelon skin mutants as tester and green wild type watermelon as control, and transcriptome sequencing and bioinformatics analysis were done. The results show that 34.27Gb clean data were got by transcriptome sequencing. There are 261 differentially expressed genes among Y-1_vs_G(1), Y-2_vs_G(2) and Y-3_vs_G(3). The pathways contenting most differentially expressed genes are plant hormone signal transduction pathway, phenylpropanoid biosynthesis pathway, photosynthesis pathway, starch and sucrose metabolism pathway. 9-cis-epoxycarotenoid dioxygenase (Cla002942), alcohol dehydrogenase (Cla004992), photosystem I reaction center subunit III, chloroplastic (precursor) (Cla009181), long-chain acyl coenzyme A synthetase (Cla017341), threonine dehydratase biosynthetic (Cla018352) candidates genes were screened out.

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