Global Gene Expression Analysis Reveals Crosstalk between Response Mechanisms to Cold and Drought Stresses in Cassava Seedlings

文献类型: 外文期刊

第一作者: Li, Shuxia

作者: Li, Shuxia;Yu, Xiaoling;Ruan, Mengbin;Li, Wenbin;Peng, Ming;Yu, Xiang;Yu, Xiang;Cheng, Zhihao;Yu, Xiang

作者机构:

关键词: cassava;cold stress;drought stress;RNA sequencing and transcriptome analysis;transcription factors;protein kinases;crosstalk

期刊名称:FRONTIERS IN PLANT SCIENCE ( 影响因子:5.753; 五年影响因子:6.612 )

ISSN: 1664-462X

年卷期: 2017 年 8 卷

页码:

收录情况: SCI

摘要: Abiotic stress negatively impacts cassava (Manihot esculenta) growth and yield. Several molecular mechanisms of plant response to cold and drought have been identified and described in the literature, however, little is known about the crosstalk of the responses of cassava to these two stresses. To elucidate this question, transcriptome analysis of cassava seedlings under cold or PEG-simulated drought stress treatment was performed. Our results showed that 6103 and 7462 transcripts were significantly regulated by cold and drought stress, respectively. Gene Ontology annotation revealed that the abscisic and jasmonic acid signaling pathways shared between the two stresses responses. We further identified 2434 common differentially expressed genes (DEGs), including 1130 up-regulated and 841 down-regulated DEGs by the two stresses. These co-induced or co-suppressed genes are grouped as stress signal perception and transduction, transcription factors (TFs), metabolism as well as transport facilitation according to the function annotation. Furthermore, a large proportion of well characterized protein kinases, TF families and ubiquitin proteasome system related genes, such as RLKs, MAPKs, AP2/ERFBPs, WRKYs, MYBs, E2 enzymes and E3 ligases, including three complexes of interacting proteins were shown as key points of crosstalk between cold and drought stress signaling transduction pathways in a hierarchical manner. Our research provides valuable information and new insights for genetically improving the tolerance of crops to multiple abiotic stresses.

分类号:

  • 相关文献

[1]Overexpression of MeDREB1D confers tolerance to both drought and cold stresses in transgenic Arabidopsis. Yang, Yiling,Wang, Bin,Yang, Yiling,Liao, Wenbin,Yu, Xiaoling,Wang, Bin,Peng, Ming,Ruan, Mengbin.

[2]Genome-wide transcriptional analysis of two soybean genotypes under dehydration and rehydration conditions. Chen, Li M.,Zhou, Xin A.,Zhou, Rong,Wang, Cheng,Sha, Ai H.,Shan, Zhi H.,Zhang, Chan J.,Qiu, De Z.,Yang, Zhong L.,Chen, Shui L.,Chen, Li M.,Zhou, Xin A.,Zhou, Rong,Wang, Cheng,Sha, Ai H.,Shan, Zhi H.,Zhang, Chan J.,Qiu, De Z.,Yang, Zhong L.,Chen, Shui L.,Chen, Li M.,Li, Wen B.,Chang, Wei,Chen, Li M.,Li, Wen B.,Chang, Wei. 2013

[3]Overexpression of Arabidopsis CBF1 gene in transgenic tobacco alleviates photoinhibition of PSII and PSI during chilling stress under low irradiance. Yang, Jia-Sen,Meng, Jing-Jing,Bi, Yu-Ping,Xu, Ping-Li,Guo, Feng,He, Qi-Wei,Li, Xin-Guo,Yang, Jia-Sen,Meng, Jing-Jing,Bi, Yu-Ping,Xu, Ping-Li,Guo, Feng,Wan, Shu-Bo,Li, Xin-Guo,Wang, Ran,Wang, Ran.

[4]Molecular cloning, characterization and expression analysis of PtrHOS1, a novel gene of cold responses from trifoliate orange [Poncirus trifoliata (L.) Raf.]. Xu, Miao,Sun, Zhong-Hai,Liu, De-Chun,He, Li-Gang,Wang, Hui-Liang,Sun, Zhong-Hai.

[5]Insight into the AP2/ERF transcription factor superfamily in sesame and expression profiling of DREB subfamily under drought stress. Dossa, Komivi,Wei, Xin,Li, Donghua,Zhang, Yanxin,Wang, Linhai,Yu, Jingyin,Boshou, Liao,Zhang, Xiurong,Dossa, Komivi,Fonceka, Daniel,Cisse, Ndiaga,Dossa, Komivi,Diouf, Diaga,Fonceka, Daniel. 2016

[6]Validation of Reference Genes for Relative Quantitative Gene Expression Studies in Cassava (Manihot esculenta Crantz) by Using Quantitative Real-Time PCR. Hu, Meizhen,Wang, Wenquan,Hu, Meizhen,Xia, Zhiqiang,Zhou, Xincheng,Wang, Wenquan,Hu, Meizhen,Wang, Wenquan,Hu, Wenbin. 2016

[7]Genome-Wide Identification and Expression Analysis of the KUP Family under Abiotic Stress in Cassava (Manihot esculenta Crantz). Ou, Wenjun,Li, Kaimian,Mao, Xiang,Huang, Chao,Tie, Weiwei,Yan, Yan,Ding, Zehong,Wu, Chunlai,Xia, Zhiqiang,Wang, Wenquan,Li, Kaimian,Hu, Wei,Zhou, Shiyi. 2018

[8]Overexpressing IbCBF3 increases low temperature and drought stress tolerance in transgenic sweetpotato. Jin, Rong,Kim, Beg Hab,Ji, Chang Yoon,Kim, Ho Soo,Kwak, Sang-Soo,Jin, Rong,Ji, Chang Yoon,Kwak, Sang-Soo,Jin, Rong,Kim, Ho Soo,Ma, Dai Fu. 2017

[9]Characterization and Functional Analysis of Pyrabactin Resistance-Like Abscisic Acid Receptor Family in Rice. Niu, Hongbin,Tian, Xiaojie,Wang, Zhenyu,Li, Xiufeng,Lv, Tianxiao,Liu, Huazhao,Bu, Qingyun,Tian, Xiaojie,Li, Xiufeng,Lv, Tianxiao,Liu, Huazhao,Wang, Lizhi. 2015

[10]Cassava postharvest physiological deterioration: a complex phenomenon involving calcium signaling, reactive oxygen species and programmed cell death. Djabou, Astride S. M.,Chen, Songbi,Djabou, Astride S. M.,Niemenak, Nicolas,Carvalho, Luiz J. C. B.,Li, Qing X..

[11]Reduced Glutathione Mediates Phone-Ultrastrcture, Kinome and Transportome in Chromium-Induced Brassica napus L.. Gill, Rafaqat A.,Ali, Basharat,Yang, Su,Islam, Faisal,Gill, Muhammad Bilal,Mwamba, Theodore M.,Ali, Skhawat,Zhou, Weijun,Gill, Rafaqat A.,Ali, Basharat,Yang, Su,Islam, Faisal,Gill, Muhammad Bilal,Mwamba, Theodore M.,Ali, Skhawat,Zhou, Weijun,Gill, Rafaqat A.,Mao, Bizeng,Ali, Basharat,Tong, Chaobo,Liu, Shengyi. 2017

[12]Differential expression profiling of the early response to Ustilaginoidea virens between false smut resistant and susceptible rice varieties. Han, Yanqing,Zhang, Kang,Yang, Jun,Zhang, Nan,Fang, Anfei,Zhang, Yong,Sun, Wenxian,Han, Yanqing,Zhang, Kang,Yang, Jun,Zhang, Nan,Fang, Anfei,Zhang, Yong,Sun, Wenxian,Liu, Yongfeng,Chen, Zhiyi,Hsiang, Tom. 2015

[13]Global analysis of the Gossypium hirsutum L. Transcriptome during leaf senescence by RNA-Seq. Min Lin,Chaoyou Pang,Shuli Fan,Meizhen Song,Hengling Wei,Shuxun Yu. 2015

[14]Isolation and Characterization of an ERF Transcription Factor Gene from Cotton (Gossypium barbadense L.). Xianpeng Meng,Fuguang Li,Chuanliang Liu,Chaojun Zhang,Zhixia Wu,Yajuan Chen.

[15]Bombyx mori transcription factors: Genome-wide identification, expression profiles and response to pathogens by microarray analysis. Cheng, Tingcai,Xu, Pingzhen,Fang, Ting,Xia, Qingyou,Huang, Lulin. 2012

[16]Molecular Characterization of MYB28 Involved in Aliphatic Glucosinolate Biosynthesis in Chinese Kale (Brassica oleracea var. alboglabra Bailey). Yin, Ling,Cao, Bihao,Lei, Jianjun,Chen, Guoju,Chen, Hancai. 2017

[17]The dynamic landscape of gene regulation during Bombyx mori oogenesis. Zhang, Qiang,Sun, Wei,Sun, Bang-Yong,Zhang, Ze,Xiao, Yang,Zhang, Ze. 2017

[18]Examining the transcriptional response of overexpressing anthranilate synthase in the hairy roots of an important medicinal plant Catharanthus roseus by RNA-seq. Sun, Jiayi,Peebles, Christie A. M.,Manmathan, Harish,Sun, Cheng,Sun, Cheng. 2016

[19]Transcriptome Analysis of Stem and Globally Comparison with Other Tissues in Brassica napus. Miao, Liyun,Zhang, Libin,Raboanatahiry, Nadia,Fu, Chunhua,Li, Maoteng,Miao, Liyun,Xiang, Jun,Gan, Jianping,Li, Maoteng,Lu, Guangyuan,Zhang, Xuekun. 2016

[20]NAC transcription factors in plant multiple abiotic stress responses: progress and prospects. Shao, Hongbo,Shao, Hongbo,Shao, Hongbo,Wang, Hongyan,Tang, Xiaoli,Wang, Hongyan. 2015

作者其他论文 更多>>