Genome-Wide Identification and Expression Analysis of the Mitogen-Activated Protein Kinase Gene Family in Cassava

文献类型： 外文期刊

第一作者： Yan, Yan

作者： Yan, Yan;Ding, Zehong;Tie, Weiwei;Ding, Xupo;Zeng, Changying;Wei, Yunxie;Peng, Ming;Hu, Wei;Wang, Lianzhe;Zhao, Hongliang

作者机构：

关键词： abiotic stress;cassava;expression;genome-wide identification;mitogen-activated protein kinase (MAPK)

期刊名称：FRONTIERS IN PLANT SCIENCE （ 影响因子：5.753； 五年影响因子：6.612 ）

ISSN： 1664-462X

年卷期： 2016 年 7 卷

页码：

收录情况： SCI

摘要： Mitogen-activated protein kinases (MAPKs) play central roles in plant developmental processes, hormone signaling transduction, and responses to abiotic stress. However, no data are currently available about the MAPK family in cassava, an important tropical crop. Herein, 21 MeMAPK genes were identified from cassava. Phylogenetic analysis indicated that MeMAPKs could be classified into four subfamilies. Gene structure analysis demonstrated that the number of introns in MeMARK genes ranged from 1 to 10, suggesting large variation among cassava MAPK genes. Conserved motif analysis indicated that all MeMAPKs had typical protein kinase domains. Transcriptomic analysis suggested that MeMAPK genes showed differential expression patterns in distinct tissues and in response to drought stress between wild subspecies and cultivated varieties. Interaction networks and co-expression analyses revealed that crucial pathways controlled by MeMAPK networks may be involved in the differential response to drought stress in different accessions of cassava. Expression of nine selected MAPK genes showed that these genes could comprehensively respond to osmotic, salt, cold, oxidative stressors, and abscisic acid (ABA) signaling. These findings yield new insights into the transcriptional control of MARK gene expression, provide an improved understanding of abiotic stress responses and signaling transduction in cassava, and lead to potential applications in the genetic improvement of cassava cultivars.

分类号：

  • 相关文献

[1]The AGPase Family Proteins in Banana: Genome-Wide Identification, Phylogeny, and Expression Analyses Reveal Their Involvement in the Development, Ripening, and Abiotic/Biotic Stress Responses. Miao, Hongxia,Liu, Juhua,Xu, Biyu,Jin, Zhiqiang,Sun, Peiguang,Jin, Zhiqiang,Liu, Qing. 2017

[2]Isolation and characterization of a cDNA encoding a papain-like cysteine protease from alfalfa. Yan, Longfeng,Han, Jianguo,Sun, Yan,Yan, Longfeng,Yang, Qingchuan,Kang, Junmei,Liu, Zhipeng,Wu, Mingsheng.

[3]Physiological Investigation and Transcriptome Analysis of Polyethylene Glycol (PEG)-Induced Dehydration Stress in Cassava. Fu, Lili,Ding, Zehong,Han, Bingying,Hu, Wei,Li, Yajun,Zhang, Jiaming. 2016

[4]Genome-Wide Identification and Expression Analysis of the WRKY Gene Family in Cassava. Wei, Yunxie,Shi, Haitao,Xia, Zhiqiang,Tie, Weiwei,Ding, Zehong,Yan, Yan,Wang, Wenquan,Hu, Wei,Li, Kaimian. 2016

[5]Genome-wide gene phylogeny of CIPK family in cassava and expression analysis of partial drought-induced genes. Hu, Wei,Xia, Zhiqiang,Yan, Yan,Ding, Zehong,Tie, Weiwei,Zou, Meiling,Wei, Yunxie,Lu, Cheng,Hou, Xiaowan,Wang, Wenquan,Peng, Ming,Wang, Lianzhe. 2015

[6]Phylogenetic and expression analysis of ZnF-AN1 genes in plants. Jin, Ying,Wang, Meng,Fu, Junjie,Xuan, Ning,Zhu, Yun,Lian, Yun,Jia, Zhiwei,Zheng, Jun,Wang, Guoying. 2007

[7]Isolation and functional characterization of HvDREB1-a gene encoding a dehydration-responsive element binding protein in Hordeum vulgare. Xu, Zhao-Shi,Ni, Zhi-Yong,Li, Zhi-Yong,Li, Lian-Cheng,Chen, Ming,Gao, Dong-Yao,Yu, Xiu-Dao,Liu, Pei,Ma, You-Zhi.

[8]Characterization and expression analysis of six MADS-box genes in maize (Zea mays L.). Zhang, Zhongbao,Li, Huiyong,Zhang, Dengfeng,Liu, Yinghui,Fu, Jing,Shi, Yunsu,Song, Yanchun,Wang, Tianyu,Li, Yu,Zhang, Zhongbao,Liu, Yinghui. 2012

[9]A set of miRNAs from Brassica napus in response to sulphate deficiency and cadmium stress. Huang, Si Qi,Xiang, An Ling,Che, Li Ling,Li, Hui,Song, Jian Bo,Yang, Zhi Min,Chen, Song.

[10]Genome-wide survey and expression analysis of the calcium-dependent protein kinase gene family in cassava. Hu, Wei,Hou, Xiaowan,Xia, Zhiqiang,Yan, Yan,Wei, Yunxie,Zou, Meiling,Lu, Cheng,Wang, Wenquan,Peng, Ming,Wang, Lianzhe.

[11]Newcastle disease virus induces apoptosis in cisplatin-resistant human lung adenocarcinoma A549 cells in vitro and in vivo. Ding, Chan,Meng, Songshu,Zhou, Zhizhi,Kong, Xiangang,Liu, Huairan,Meng, Songshu,Zhou, Zhizhi,Chen, Fei,Jiang, Ke,Liu, Wenbo,Hu, Maozhi,Zhang, Xiaorong,Wu, Yantao.

[12]Genome-wide analysis of the Hsf family in soybean and functional identification of GmHsf-34 involvement in drought and heat stresses. Li, Pan-Song,Chai, Shou-Cheng,Li, Pan-Song,Yu, Tai-Fei,He, Guan-Hua,Chen, Ming,Zhou, Yong-Bin,Xu, Zhao-Shi,Ma, You-Zhi. 2014

[13]Genome-Wide Analysis of the C3H Zinc Finger Transcription Factor Family and Drought Responses of Members in Aegilops tauschii. Jiang, An-Long,Xu, Zhao-Shi,Zhao, Guang-Yao,Cui, Xiao-Yu,Chen, Ming,Li, Lian-Cheng,Ma, You-Zhi.

[14]Investigation of the ASR family in foxtail millet and the role of ASR1 in drought/oxidative stress tolerance. Feng, Zhi-Juan,Xu, Zhao-Shi,Li, Lian-Cheng,Chen, Ming,Ma, You-Zhi,Feng, Zhi-Juan,Sun, Jiutong,Yang, Guang-Xiao,He, Guang-Yuan.

[15]Genome-wide characterization and expression analysis enables identification of abiotic stress-responsive MYB transcription factors in cassava (Manihot esculenta). Li, Wen-Qi,Yu, Xiao-Ling,Peng, Ming,Ruan, Meng-Bin,Yu, Xiao-Ling,Peng, Ming,Guo, Xin,Wang, Bin,Yang, Yi-Ling,Zhang, Peng.

[16]Renaturation and purification of ApxII toxin of Actinobacillus pleuropneumoniae. Wang, Chunlai,Liu, Siguo,Peng, Yonggang,Shao, Meili,Wang, Yong,Gong, Qiang,Chang, Yuehong,Liu, Jiandong,Liu, Huifang,Liu, Di,Kong, Xiangang.

[17]Expression of Prolactin Receptor mRNA after Melatonin Manipulated in Cashmere Goats Skin during Cashmere Growth. Zhang, Wei,Zhu, Xiaoping,Jia, Zhihai,Yue, Chunwang,Kong, Xianghao,Du, Lixin.

[18]Effects of age and strain on the expression of leptin receptor, neuropeptide Y and pro-opiomelanocortin in the hypothalamus of young chickens. Huang, J. X.,Lu, L.,Luo, X. G.,Liu, B.,Huang, J. X.,Lu, L.,Luo, X. G.,Liu, B.,Huang, J. X.,Xi, L..

[19]Cloning and expression of Toll-like receptors 1 and 2 from a teleost fish, the orange-spotted grouper Epinephelus coioides. Wei, You Chuan,Luo, Ting Rong,Wei, You Chuan,Pan, Ting Shuang,Chang, Ming Xian,Huang, Bei,Xu, Zhen,Nie, P.,Pan, Ting Shuang.

[20]Garlic virus X 11-kDa protein granules move within the cytoplasm and traffic a host protein normally found in the nucleolus. Lu, Yuwen,Yan, Fei,Zheng, Hongying,Lin, Lin,Peng, Jiejun,Chen, Jianping,Lu, Yuwen,Yan, Fei,Zheng, Hongying,Lin, Lin,Peng, Jiejun,Chen, Jianping,Guo, Wei,Peng, Jiejun.

作者其他论文 更多>>

微信小程序