A high density genetic map and QTL for agronomic and yield traits in Foxtail millet [Setaria italica (L.) P. Beauv.]

文献类型： 外文期刊

第一作者： Fang, Xiaomei

作者： Fang, Xiaomei;Wang, Xiaoqin;Liu, Rui;Liu, Xueying;Li, Man;Huang, Mengzhu;Zhang, Zhengsheng;Dong, Kongjun;Liu, Tianpeng;He, Jihong;Ren, Ruiyu;Zhang, Lei;Yang, Tianyu

作者机构：

关键词： Genetic map;QTL;Agronomic traits;Yield traits;Foxtail millet (Setaria italica L.)

期刊名称：BMC GENOMICS （ 影响因子：3.969； 五年影响因子：4.478 ）

ISSN： 1471-2164

年卷期： 2016 年 17 卷

页码：

收录情况： SCI

摘要： Background: Foxtail millet [Setaria italica (L.) P. Beauv.], a crop of historical importance in China, has been adopted as a model crop for studying C-4 photosynthesis, stress biology and biofuel traits. Construction of a high density genetic map and identification of stable quantitative trait loci (QTL) lay the foundation for marker-assisted selection for agronomic traits and yield improvement. Result: A total of 10598 SSR markers were developed according to the reference genome sequence of foxtail millet cultivar 'Yugu1'. A total of 1013 SSR markers showing polymorphism between Yugu1 and Longgu7 were used to genotype 167 individuals from a Yugu1 x Longgu7 F-2 population, and a high density genetic map was constructed. The genetic map contained 1035 loci and spanned 1318.8 cM with an average distance of 1.27 cM between adjacent markers. Based on agronomic and yield traits identified in 2 years, 29 QTL were identified for 11 traits with combined analysis and single environment analysis. These QTL explained from 7.0 to 14.3 % of phenotypic variation. Favorable QTL alleles for peduncle length originated from Longgu7 whereas favorable alleles for the other traits originated from Yugu1 except for qLMS6.1. Conclusions: New SSR markers, a high density genetic map and QTL identified for agronomic and yield traits lay the ground work for functional gene mapping, map-based cloning and marker-assisted selection in foxtail millet.

分类号：

  • 相关文献

[1]Quantitative trait loci mapping for yield and its components by using two immortalized populations of a heterotic hybrid in Gossypium hirsutum L.. Liu, Renzhong,Wang, Baohua,Guo, Wangzhen,Qin, Yongsheng,Zhang, Yuanming,Zhang, Tianzhen,Liu, Renzhong,Wang, Liguo. 2012

[2]Quantitative trait loci underlying the development of seed composition in soybean (Glycine max L. Merr.). Li, Wenbin,Sun, Desheng,Du, Yuping,Chen, Qingshan,Zhang, Zhongchen,Qiu, Lijuan,Sun, Genlou.

[3]Quantitative trait loci for resistance to Sharp Eyespot (Rhizoctonia cerealis) in recombinant inbred wheat lines from the cross Niavt 14 x Xuzhou 25. Jiang, Yanjie,Zhu, Fangfang,Cai, Shibin,Wu, Jizhong,Zhang, Qiaofeng. 2016

[4]A major quantitative trait locus conferring resistance to fusarium wilt was detected in cucumber by using recombinant inbred lines. Zhang, Sheng-ping,Miao, Han,Yang, Yu-hong,Xie, Bing-yan,Wang, Ye,Gu, Xing-fang.

[5]Drought-Tolerant Plant Growth-Promoting Rhizobacteria Associated with Foxtail Millet in a Semi-arid and Their Potential in Alleviating Drought Stress. Niu, Xuguang,Song, Lichao,Xiao, Yinong,Niu, Xuguang,Song, Lichao,Xiao, Yinong,Ge, Weide. 2018

[6]Effects of Hd2 in the presence of the photoperiod-insensitive functional allele of Hd1 in rice. Zhuang, Jie-Yun,Cheng, Shi-Hua. 2016

[7]Identification of QTL for growth- and grain yield-related traits in rice across nine locations of Asia. Hittalmani, S,Huang, N,Courtois, B,Venuprasad, R,Shashidhar, HE,Zhuang, JY,Zheng, KL,Liu, GF,Wang, GC,Sidhu, JS,Srivantaneeyakul, S,Singh, VP,Bagali, PG,Prasanna, HC,McLaren, G,Khush, GS. 2003

[8]Genetic mapping of yield traits using RIL population derived from Fuchuan Dahuasheng and ICG6375 of peanut (Arachis hypogaea L.). Chen, Yuning,Ren, Xiaoping,Zheng, Yanli,Zhou, Xiaojing,Huang, Li,Yan, Liying,Jiao, Yongqing,Chen, Weigang,Huang, Shunmou,Wan, Liyun,Lei, Yong,Liao, Boshou,Huai, Dongxin,Wei, Wenhui,Jiang, Huifang.

[9]Quantitative Trait Locus Analysis for Yield Traits of Cassava (Manihot esculenta Crantz). Yan, Qingxiang,Li, Kaimian,Zhang, Xueqin,Ye, Jianqiu,Chen, Songbi,Li, Qing X.,Huang, Dongyi. 2014

[10]Validation and dissection of quantitative trait loci for leaf traits in interval RM4923-RM402 on the short arm of rice chromosome 6. Shen, Bo,Yu, Wei-Dong,Du, Jing-Hong,Fan, Ye-Yang,Wu, Ji-Rong,Zhuang, Jie-Yun,Shen, Bo,Yu, Wei-Dong,Du, Jing-Hong,Fan, Ye-Yang,Wu, Ji-Rong,Zhuang, Jie-Yun,Shen, Bo,Yu, Wei-Dong,Du, Jing-Hong.

[11]Identification of Rice Ethylene-Response Mutants and Characterization of MHZ7/OsEIN2 in Distinct Ethylene Response and Yield Trait Regulation. Ma, Biao,He, Si-Jie,Duan, Kai-Xuan,Yin, Cui-Cui,Chen, Hui,Yang, Chao,Xiong, Qing,Song, Qing-Xin,Lu, Xiang,Chen, Hao-Wei,Zhang, Wan-Ke,Chen, Shou-Yi,Zhang, Jin-Song,Lu, Tie-Gang.

[12]RFLP mapping of QTLs for yield and related characters in rice (Oryza sativa L). Lin, HX,Qian, HR,Zhuang, JY,Lu, J,Min, SK,Xiong, ZM,Huang, N,Zheng, KL. 1996

[13]Evaluation of agronomic and physiological traits associated with high temperature stress tolerance in the winter wheat cultivars. Cao, Xinyou,Cheng, Dungong,Wang, Canguo,Liu, Aifeng,Song, Jianming,Li, Haosheng,Zhao, Zhendong,Liu, Jianjun,Mondal, S.. 2015

[14]Developing a core collection of litchi (Litchi chinensis Sonn.) based on EST-SSR genotype data and agronomic traits. Sun, Qingming,Bai, Lijun,Xiang, Xu,Zhao, Junsheng,Ou, Liangxi,Ke, Lixiang. 2012

[15]Utilization of UPLC/Q-TOF-MS-Based Metabolomics and AFLP-Based Marker-Assisted Selection to Facilitate/Assist Conventional Breeding of Polygala tenuifolia. Li, Juan,Wang, Dan-Dan,Bai, Lu,Pu, Ya-Jie,Qin, Xue-Mei,Zhang, Fu-Sheng,Wang, Dan-Dan,Bai, Lu,Pu, Ya-Jie,Xu, Xiao-Shuang,Peng, Bing,Tian, Hong-Ling,Ma, Cun-Gen. 2017

[16]Descriptive statistics and correlation analysis of agronomic traits in a maize recombinant inbred line population. Zhang, H. M.,Hui, G. Q.,Luo, Q.,Liu, X. H.,Sun, Y.,Zhang, H. M.,Hui, G. Q.,Luo, Q.,Sun, Y.. 2014

[17]QTL mapping for agronomic traits using multi-parent advanced generation inter-cross (MAGIC) populations derived from diverse elite indica rice lines. Meng, Lijun,Zhao, Xiangqian,Ponce, Kimberly,Ye, Guoyou,Leung, Hei,Meng, Lijun.

[18]Effects of the Vrn-D1b allele associated with facultative growth habit on agronomic traits in common wheat. Meng, Ling-zhi,Liu, Hong-wei,Yang, Li,Li, Hong-jie,Zhang, Hong-jun,Zhou, Yang,Mai, Chun-yan,Yu, Li-qiang.

[19]The effect of waterlogging on yield and seed quality at the early flowering stage in Brassica napus L.. Xu, Mingyue,Ma, Haiqing,Zeng, Liu,Cheng, Yong,Lu, Guangyuan,Xu, Jinsong,Zhang, Xuekun,Zou, Xiling,Ma, Haiqing.

[20]Identification of interspecific heterotic loci associated with agronomic traits in rice introgression lines carrying genomic fragments of Oryza glaberrima. Nassirou, Tondi Yacouba,He, Wenchuang,Chen, Caijin,Nsabiyumva, Athanase,Dong, Xilong,Yin, Yilong,Rao, Quanqin,Zhou, Wei,Shi, Han,Zhao, Wubin,Jin, Deming,Nevame, Adedze Y. M..

作者其他论文 更多>>

微信小程序