Altitude-dependent agro-ecologies impact the microbiome diversity of scavenging indigenous chicken in Ethiopia

文献类型： 外文期刊

第一作者： Glendinning, Laura

作者： Glendinning, Laura;Jia, Xinzheng;Kebede, Adebabay;Hanotte, Olivier;Kebede, Adebabay;Oyola, Samuel O.;Park, Jong-Eun;Park, Jong-Eun;Park, Woncheoul;Assiri, Abdulwahab;Hanotte, Olivier;Assiri, Abdulwahab;Holm, Jacob Bak;Kristiansen, Karsten;Holm, Jacob Bak;Kristiansen, Karsten;Han, Jianlin

作者机构：

关键词： Chicken; Microbiota; Metagenomics; Ethiopia; Poultry; Agro-ecology

期刊名称：MICROBIOME （ 影响因子：13.8； 五年影响因子：17.9 ）

ISSN： 2049-2618

年卷期： 2024 年 12 卷 1 期

页码：

收录情况： SCI

摘要： BackgroundScavenging indigenous village chickens play a vital role in sub-Saharan Africa, sustaining the livelihood of millions of farmers. These chickens are exposed to vastly different environments and feeds compared to commercial chickens. In this study, we analysed the caecal microbiota of 243 Ethiopian village chickens living in different altitude-dependent agro-ecologies.ResultsDifferences in bacterial diversity were significantly correlated with differences in specific climate factors, topsoil characteristics, and supplemental diets provided by farmers. Microbiota clustered into three enterotypes, with one particularly enriched at high altitudes. We assembled 9977 taxonomically and functionally diverse metagenome-assembled genomes. The vast majority of these were not found in a dataset of previously published chicken microbes or in the Genome Taxonomy Database.ConclusionsThe wide functional and taxonomic diversity of these microbes highlights their importance in the local adaptation of indigenous poultry, and the significant impacts of environmental factors on the microbiota argue for further discoveries in other agro-ecologies.EEwR8PKafK2-LVnkA2-YG-Video AbstractConclusionsThe wide functional and taxonomic diversity of these microbes highlights their importance in the local adaptation of indigenous poultry, and the significant impacts of environmental factors on the microbiota argue for further discoveries in other agro-ecologies.EEwR8PKafK2-LVnkA2-YG-Video Abstract

分类号：

  • 相关文献
作者其他论文 更多>>
  • Complete Genomic Landscape Reveals Hidden Evolutionary History and Selection Signature in Asian Water Buffaloes (Bubalus bubalis)

    作者：Si, Jingfang;Dai, Dongmei;Dhakal, Aashish;Omar, Abdullah Ibne;Zhang, Yi;Gorkhali, Neena Amatya;Sapkota, Saroj;Wang, Mingshan;Wang, Sheng;Wu, Dong-Dong;Kadel, Ram Chandra;Sadaula, Amir;Faruque, Md Omar;Sari, Eka Meutia;Ashari, Hidayat;Dagong, Muhammad Ihsan Andi;Yindee, Marnoch;Rushdi, Hossam E.;Amin, Ahmed;Radwan, Mohamed A.;Elregalaty, Hussein;Pham, Lan Doan;Hulugalla, W. M. M. P.;Silva, G. L. L. Pradeepa;Zheng, Wei;Mansoor, Shahid;Ali, Muhammad Basil;Mansoor, Shahid;Vahidi, Farhad;Al-Bayatti, Sahar Ahmed;Pauciullo, Alfredo;Lenstra, Johannes A.;Barker, J. Stuart F.;Fang, Lingzhao;Han, Jianlin

    关键词：buffalo; CSN2; MC1R; population genomics; selection; single-cell RNA-seq

  • Comparative Analysis of Runs of Homozygosity Islands in Indigenous and Commercial Chickens Revealed Candidate Loci for Disease Resistance and Production Traits

    作者：Mahdabi, Elaheh Rostamzadeh;Esmailizadeh, Ali;Esmailizadeh, Ali;Wang, Ming-Shan;Han, Jianlin

    关键词：chicken; disease resistance; genomic inbreeding; indigenous ecotypes; ROH islands; selection signature

  • Structural Variations Associated with Adaptation and Coat Color in Qinghai-Tibetan Plateau Cattle

    作者：Xia, Xiaoting;Wang, Fuwen;Luo, Xiaoyu;Li, Shuang;Zheng, Yining;Dang, Ruihua;Huang, Yongzhen;Lan, Xianyong;Wang, Yu;Deng, Lu;Han, Jianlin;Lei, Chuzhao;Chen, Ningbo;Wang, Fuwen;Ma, Zhijie;Lyu, Yang;Lyu, Wenfa;Ma, Zhijie;Li, Ruizhe;Wu, Zhipeng;Qu, Kaixing;Song, Rende;Liu, Jianyong;Zhang, Jicai;Huang, Bizhi;Wangdui, Basang;Zhuzha, Basang;Quji, Suolang;Zhao, Li;Wangmu, Silang;Luobu, Ciren;Cangjue, Nima;Luosang, Danzeng;Sizhu, Suolang;Cheng, Haijian;Xu, Luohao;Hu, Haifei;Hu, Haifei;Low, Waiyee;Low, Waiyee;Zheng, Zhuqing;Gao, Yuanpeng;Lenstra, Johannes A.;Han, Jianlin;Lyu, Wenfa;Yang, Xueyi

    关键词：cattle; coat color; genome assembly; high-altitude adaptation; structural variation

  • Structural Variations Associated with Adaptation and Coat Color in Qinghai-Tibetan Plateau Cattle

    作者：Xia, Xiaoting;Wang, Fuwen;Luo, Xiaoyu;Li, Shuang;Zheng, Yining;Dang, Ruihua;Huang, Yongzhen;Lan, Xianyong;Wang, Yu;Deng, Lu;Han, Jianlin;Lei, Chuzhao;Chen, Ningbo;Wang, Fuwen;Ma, Zhijie;Lyu, Yang;Lyu, Wenfa;Ma, Zhijie;Li, Ruizhe;Wu, Zhipeng;Qu, Kaixing;Song, Rende;Liu, Jianyong;Zhang, Jicai;Huang, Bizhi;Wangdui, Basang;Zhuzha, Basang;Quji, Suolang;Zhao, Li;Wangmu, Silang;Luobu, Ciren;Cangjue, Nima;Luosang, Danzeng;Sizhu, Suolang;Cheng, Haijian;Xu, Luohao;Hu, Haifei;Hu, Haifei;Low, Waiyee;Low, Waiyee;Zheng, Zhuqing;Gao, Yuanpeng;Lenstra, Johannes A.;Han, Jianlin;Lyu, Wenfa;Yang, Xueyi

    关键词：cattle; coat color; genome assembly; high-altitude adaptation; structural variation

  • Positive selection on rare variants of IGF1R and BRD4 underlying the cold adaptation of wild boar

    作者：Chen, Jianhai;Xu, Zhixiang;Guo, Yapin;Kuang, Renzuo;Zhao, Yunxia;Zhao, Shuhong;Chen, Jianhai;Xia, Shengqian;Jia, Yangying;Chen, Jianhai;Jakovlic, Ivan;Jakovlic, Ivan;Jakovlic, Ivan;Sablin, Mikhail;Zhong, Jie;Tran, Nhien Thuy Thi;Tran, Nhien Thuy Thi;Yang, Hao;Ma, Hong;Liu, Di;Sprem, Nikica;Han, Jianlin;Zhao, Yunxia;Zhao, Shuhong

    关键词：

  • Genomic Reference Resource for African Cattle: Genome Sequences and High-Density Array Variants

    作者：Tijjani, Abdulfatai;Kambal, Sumaya;Hanotte, Olivier;Tijjani, Abdulfatai;Kambal, Sumaya;Terefe, Endashaw;Njeru, Regina;Ogugo, Moses;Ndambuki, Gideon;Tiambo, Christian;Kemp, Stephen J.;Marshall, Karen;Missohou, Ayao;Traore, Amadou;Salim, Bashir;Salim, Bashir;Ezeasor, Chukwunonso;D'andre, H. Claire;Obishakin, Emmanuel T.;Diallo, Boubacar;Talaki, Essodina;Abdoukarim, Issaka Y.;Nash, Oyekanmi;Osei-Amponsah, Richard;Ravaorimanana, Simeone;Issa, Youssouf;Zegeye, Tsadkan;Mukasa, Christopher;Prendergast, James G. D.;Han, Jianlin;Han, Jianlin;Hanotte, Olivier

    关键词：

  • MicroRNA expression profile of chicken jejunum in different time points Eimeria maxima infection

    作者：Jebessa, Endashaw;Bello, Semiu Folaniyi;Guo, Lijin;Nie, Qinghua;Jebessa, Endashaw;Bello, Semiu Folaniyi;Guo, Lijin;Nie, Qinghua;Jebessa, Endashaw;Bello, Semiu Folaniyi;Guo, Lijin;Nie, Qinghua;Jebessa, Endashaw;Hanotte, Olivier;Tuli, Merga Daba;Hanotte, Olivier

    关键词：microRNA; expression profile; chicken jejunum; host immunity; Eimeria maxima

微信小程序