Time-course RNA-sequencing and Co-expression Modules Revealed a Critical Salt Response Regulatory Network in Apple
文献类型： 外文期刊
作者： Huang, Xin 1 ; Zhang, Meiling 2 ; Wang, Liping 1 ; Zhang, Xuyao 1 ; Wu, Ruigang 1 ; Shen, Fei 3 ;
作者机构： 1.Hebei Univ Engn, Coll Landscape & Ecol Engn, Handan 056038, Hebei, Peoples R China
2.Beijing Acad Agr & Forestry Sci, Inst Forestry & Pomol, Beijing 100093, Peoples R China
3.Beijing Acad Agr & Forestry Sci, Beijing Agrobiotechnol Res Ctr, Beijing 100097, Peoples R China
关键词： gene expression; Malus domestica; regulatory network; salt stress; transcriptome sequencing
期刊名称：JOURNAL OF THE AMERICAN SOCIETY FOR HORTICULTURAL SCIENCE （ 影响因子：1.9； 五年影响因子：1.8 ）
ISSN： 0003-1062
年卷期： 2023 年 148 卷 2 期
页码：
收录情况： SCI
摘要： . As one of the most important fruit tree crops, apple (Malus xdomestica), is faced with the serious impact of soil salinization. However, the underlying genetic and regulatory network remains elusive. Here, we adopted time-course RNA sequencing to decipher the genetic basis and regulatory module of apple in response to salt stress. Among a series of intense changes in genes at each time point, the critical genes in the mitogen-activated protein kinase signaling pathway were highly consistent with the duration of the stress treatment. Moreover, Salt Overly Sensitive 1 (SOS1) genes were identified and predicted to play important roles in the response process. We constructed coexpression modules and explored modules significantly associated with stress. SOS genes were identified in the hub genes, suggesting a critical role. Interestingly, transcription factors were also identified and predicted to cointeract with SOS genes in the hub genes of the coexpression module [e.g., HB7 (MD01G1226600), WRKY33 (MD12G1181000), and ERF106 (MD07G1248700)]. Collectively, our exploration and findings provide a reference and data resource for the study of genetic and salt regulatory networks in apple.
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