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Genome-Wide Identification, Characterization, and Expression Analysis of the MYB-R2R3 Gene Family in Black Pepper (Piper nigrum L.)

文献类型： 外文期刊

作者： Fan, Rui 1 ; Huang, Kai 2 ; Zhao, Zhican 4 ; Hao, Yupeng 2 ; Guan, Xueying 3 ; Luo, Haiyan 5 ; Hao, Chaoyun 1 ;

作者机构： 1.Chinese Acad Trop Agr Sci CATAS, Spice & Beverage Res Inst, Wanning 571533, Peoples R China

2.Zhejiang Univ, Inst Crop Sci, China Zhejiang Prov Key Lab Crop Genet Resources, Coll Agr & Biotechnol,Plant Precis Breeding Acad, Hangzhou 310058, Peoples R China

3.Zhejiang Univ, Hainan Inst, Bldg 11,Yonyou Ind Pk,Yazhou Bay Sci & Technol Cit, Sanya 572025, Peoples R China

4.Yunnan Agr Univ, Coll Trop Crops, Puer 665099, Peoples R China

5.Chinese Acad Trop Agr Sci CATAS, Trop Croups Genet Resources, Haikou 571101, Peoples R China

关键词： black pepper; Phytophthora capsici; gene expression

期刊名称：INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES （ 影响因子：4.9； 五年影响因子：5.7 ）

ISSN： 1661-6596

年卷期： 2024 年 25 卷 18 期

页码：

收录情况： SCI

摘要： Black pepper (Piper nigrum L.), a prominent spice crop, known as the "king of spices", originated from India. The growth and development of black pepper are influenced by various environmental conditions. MYB transcription factors play a crucial role in controlling metabolic processes, abiotic stress management, and plant growth and development. In this study, we identified 160 PnMYB transcription factors in the black pepper genome. Phylogenetic analysis was performed using 125 R2R3-MYB proteins from black pepper and Arabidopsis thaliana, resulting in the mapping of 20 groups on the phylogenetic tree, each containing members from both species. Most members of the PnMYB family possess two introns, and motif 3 and motif 4 are conserved in all members. The number of genes on each chromosome ranges from 1 to 10. Collinear analysis indicated the creation of new members through gene fragments and tandem replication. The Ka/Ks ratio indicated that purifying selection and positive selection acted on PnMYB of pepper. The majority of pepper PnMYB family members were in the nucleus. Significant differences in gene expression levels were observed between different species and infection periods when Piper nigrum L. and Piper flaviflorum were infected with Phytophthora capsici. These findings are valuable for future studies on the biological role and molecular mechanism of the PnMYB gene.

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