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Genome-Wide Association Study Reveals a New Quantitative Trait Locus in Rice Related to Resistance to Brown Planthopper Nilaparvata lugens (Stal)

文献类型： 外文期刊

作者： Shi, Longqing 1 ; Dong, Meng 1 ; Lian, Ling 1 ; Zhang, Junian 1 ; Zhu, Yongsheng 1 ; Kong, Weilong 2 ; Qiu, Liangmiao; 1 ;

作者机构： 1.Fujian Acad Agr Sci, Rice Res Inst, Fuzhou 350018, Peoples R China

2.Chinese Acad Agr Sci, Agr Genom Inst Shenzhen, Shenzhen Branch,Minist Agr & Rural Affairs, Guangdong Lab Lingnan Modern Agr,Genome Anal Lab, Shenzhen 518120, Peoples R China

3.Fujian Acad Agr Sci, Inst Plant Protect, Fuzhou 350013, Peoples R China

期刊名称：INSECTS （ 影响因子：2.769； 五年影响因子：3.046 ）

ISSN：

年卷期： 2021 年 12 卷 9 期

页码：

收录情况： SCI

摘要： The brown planthopper (BPH) is one of the main pests endangering rice yields. The development of rice varieties harboring resistance genes is the most economical and effective method of managing BPH. To identify new BPH resistance-related genes, a total of 123 rice varieties were assessed for resistance and durable resistance. Three varieties were immune, and nine were highly resistant to BPH. After whole-genome resequencing of all 123 varieties, 1,897,845 single nucleotide polymorphisms (SNPs) were identified. Linkage disequilibrium (LD) decay analysis showed that the average LD of the SNPs at 20 kb was 0.30 (r(2)) and attenuated to half value (similar to 0.30) at a distance of about 233 kb. A genome-wide association study (GWAS) of durable resistance to BPH was conducted using the Fast-MLM model. One quantitative trait locus, identified on chromosome 2, included 13 candidate genes. Two candidate genes contained a leucine-rich repeat and CC-NBS-LRR or NB-ARC domains, which might confer resistance to pests or diseases. Interestingly, LOC_Os02g27540 was highly expressed and was induced by BPH; GWAS identified potential rice genes coding for durable resistance to BPH. This study helps to elucidate the mechanism of durable resistance to BPH in rice and provides essential genetic information for breeding and functional verification of resistant varieties.

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