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The genome and transcriptome analysis of snake gourd provide insights into its evolution and fruit development and ripening

文献类型： 外文期刊

作者： Ma, Lili 1 ; Wang, Qing 1 ; Mu, Jianlou 2 ; Fu, Anzhen 1 ; Wen, Changlong 1 ; Zhao, Xiaoyan 1 ; Gao, Lipu 1 ; Li, Jian 3 ; S 1 ;

作者机构： 1.Beijing Acad Agr & Forestry Sci, Key Lab Urban Agr North,Collaborat Innovat Ctr Cu, Key Lab Biol & Genet Improvement Hort Crops North, Key Lab Vegetable Postharvest Proc,Minist Agr,Bei, Beijing 100097, Peoples R China

2.Hebei Agr Univ, Coll Food Sci & Technol, Baoding 071001, Peoples R China

3.Beijing Technol & Business Univ, Beijing Adv Innovat Ctr Food Nutr & Human Hlth, Beijing 100048, Peoples R China

4.Zhejiang Univ, Dept Hort, Hangzhou 310058, Peoples R China

5.Biomarker Technol Corp, Beijing 101300, Peoples R China

6.Cornell Univ, Boyce Thompson Inst Plant Res, Ithaca, NY 14853 USA

7.USDA ARS, Robert W Holley Ctr Agr & Hlth, Ithaca, NY 14853 USA

8.Univ Nottingham, Sch Biosci, Sutton Bonington Campus, Loughborough LE12 5RD, Leics, England

期刊名称：HORTICULTURE RESEARCH （ 影响因子：6.793； 五年影响因子：6.589 ）

ISSN： 2662-6810

年卷期： 2020 年 7 卷 1 期

页码：

收录情况： SCI

摘要： Snake gourd (Trichosanthes anguina L.), which belongs to the Cucurbitaceae family, is a popular ornamental and food crop species with medicinal value and is grown in many parts of the world. Although progress has been made in its genetic improvement, the organization, composition, and evolution of the snake gourd genome remain largely unknown. Here, we report a high-quality genome assembly for snake gourd, comprising 202 contigs, with a total size of 919.8Mb and an N50 size of 20.1Mb. These findings indicate that snake gourd has one of the largest genomes of Cucurbitaceae species sequenced to date. The snake gourd genome assembly harbors 22,874 protein-coding genes and 80.0% of the genome consists of repetitive sequences. Phylogenetic analysis reveals that snake gourd is closely related to sponge gourd but diverged from their common ancestor similar to 33-47 million years ago. The genome sequence reported here serves as a valuable resource for snake gourd genetic research and comparative genomic studies in Cucurbitaceae and other plant species. In addition, fruit transcriptome analysis reveals the candidate genes related to quality traits during snake gourd fruit development and provides a basis for future research on snake gourd fruit development and ripening at the transcript level.

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