Identification and functional prediction of lncRNAs during cassava post-harvest physiological deterioration
文献类型： 外文期刊
作者： Zeng, Jian 1 ; Wang, Cheng 4 ; Ding, Zehong 2 ; Wang, Bin 1 ; Liu, Yujia 1 ; Guo, Jing 1 ; Chen, Jie 1 ; Wu, Chunlai 2 ; Tie 1 ;
作者机构： 1.Shaoguan Univ, Henry Fok Coll Biol & Agr, Shaoguan, Peoples R China
2.Chinese Acad Trop Agr Sci, Inst Trop Biosci & Biotechnol, Key Lab Biol & Genet Resources Trop Crops, Hainan Key Lab Biosafety Monitoring & Mol Off Br, Haikou, Hainan, Peoples R China
3.Chinese Acad Trop Agr Sci, Hainan Inst Trop Agr Resources, Hainan Key Lab Protect & Utilizat Trop Bioresourc, Haikou, Hainan, Peoples R China
4.Yue Bei Peoples Hosp, Shaoguan, Peoples R China
期刊名称：AGRONOMY JOURNAL （ 影响因子：2.24； 五年影响因子：2.829 ）
ISSN： 0002-1962
年卷期： 2020 年 112 卷 6 期
页码：
收录情况： SCI
摘要： Cassava (Manihot esculenta Crantz) is an important staple food crop in Latin America and Africa. However, after harvest, the tuberous roots undergo rapid post-harvest physiological deterioration (PPD), a known perishable phenomenon that usually appears within 72 h post-harvest. Post-harvest physiological deterioration largely reduces the quality and economic value of cassava tuberous roots, restricting the use of cassava as a raw material in the food industry. To analyze the regulatory roles of long non-coding RNAs (lncRNAs) during PPD, whole systematic screening of lncRNAs was performed. In this study, 288 differentially expressed lncRNAs were identified from 2,787 high-confidence lncRNAs during PPD. cis-Acting analysis revealed 10 interested lncRNA-mRNA pairs, in which the neighboring protein-coding genes were mainly related to ethylene signaling, calcium sensors, and transcription factors. trans-Regulatory coexpression network analysis reported that lncRNAs were potentially associated with genes involved in the oxidation-reduction process. These results present a broad vision of cassava lncRNAs during PPD and provide the potential candidates for genetic engineering to alleviate deterioration of tuberous roots.
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