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Insight of transcriptional regulators reveals the tolerance mechanism of carpet-grass (Axonopus compressus) against drought

文献类型： 外文期刊

作者： Nawaz, Mohsin 1 ; Li, Liao 1 ; Azeem, Farrukh 3 ; Shabbir, Samina 4 ; Zohaib, Ali 5 ; Ashraf, Umair 6 ; Yang, Hubiao 7 ;

作者机构： 1.Hainan Univ, Coll Forestry, Minist Educ, Key Lab Genet & Germplasm Innovat Trop Special Fo, Haikou 570228, Hainan, Peoples R China

2.Hainan Univ, Coll Trop Crops, Haikou 570228, Hainan, Peoples R China

3.Govt Coll Univ, Dept Bioinformat & Biotechnol, Faisalabad, Pakistan

4.Minist Agr, Biomass Energy Technol Res Ctr, Key Lab Dev & Applicat Rural Renewable Energy, Biogas Inst, South Renmin Rd, Chengdu 610041, Peoples R China

5.Adapt Res Farm, Gujranwala 52250, Pakistan

6.Univ Educ, Dept Bot, Faisalabad Campus, Faisalabad 38000, Pakistan

7.Chinese Acad Trop Agr Sci, Trop Crops Genet Resources Inst, Danzhou 571737, Hainan, Peoples R China

关键词： Drought; Axonopus compressus; qRT-PCR; Enrichment analysis; lncRNAs; miRNAs; Transcriptomics

期刊名称：BMC PLANT BIOLOGY （ 影响因子：4.215； 五年影响因子：4.96 ）

ISSN： 1471-2229

年卷期： 2021 年 21 卷 1 期

页码：

收录情况： SCI

摘要： BackgroundCarpet grass [Axonopus compressus (L.)] is an important warm-season perennial grass around the world and is known for its adaptability to varied environmental conditions. However, Carpet grass lacks enough data in public data banks, which confined our comprehension of the mechanisms of environmental adaptations, gene discovery, and development of molecular markers. In current study, the DEGs (differentially expressed genes) in Axonopus compressus under drought stress (DS) were identified and compared with CK (control) by RNA-Seq.ResultsA total of 263,835 unigenes were identified in Axonopus compressus, and 201,303 (also added to the numbers of the remaining 2 databases) a sequence of unigenes significantly matched in at least one of the seven databases. A total of 153,697 (58.25%) unigenes classified to 144 KEGG pathways, and 7444 unigenes were expressed differentially between DS and CK, of which 4249 were up-regulated and 3195 were down-regulated unigenes. Of the 50 significantly enriched GO terms, 18, 6, and 14 items were related to BP, CC, and MF respectively. Analysis of KEGG enrichment revealed 2569 DEGs involved in 143 different pathways, under drought stress. 2747 DEGs were up-regulated and 2502 DEGs were down-regulated. Moreover, we identified 352 transcription factors (TFs) in Axonopus compressus, of which 270 were differentially expressed between CK and DS. The qRT-PCR validation experiment also supports the transcriptional response of Axonopus compressus against drought. Accuracy of transcriptome unigenes of Axonopus compressus was assessed with BLAST, which showed 3300 sequences of Axonopus compressus in the NCBI.ConclusionThe 7444 unigenes were found to be between DS and CK treatments, which indicate the existence of a strong mechanism of drought tolerance in Axonopus compressus. The current findings provide the first framework for further investigations for the particular roles of these unigenes in Axonopus compressus in response to drought.

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