Genome-based reclassification of Bacillus plakortidis Borchert et al. 2007 and Bacillus lehensis Ghosh et al. 2007 as a later heterotypic synonym of Bacillus oshimensis Yumoto et al. 2005; Bacillus rhizosphaerae Madhaiyan et al. 2011 as a later heterotypic synonym of Bacillus clausii Nielsen et al. 1995
文献类型： 外文期刊
作者： Liu, Guo-Hong 1 ; Rao, Manik Prabhu Narsing 2 ; Dong, Zhou-Yan 2 ; Wang, Jie-Ping 1 ; Che, Jian-Mei 1 ; Chen, Qian- 1 ;
作者机构： 1.Fujian Acad Agr Sci, Agr Bioresources Res Inst, Fuzhou 350003, Fujian, Peoples R China
2.Sun Yat Sen Univ, Sch Life Sci, State Key Lab Biocontrol, Guangzhou 510275, Guangdong, Peoples R China
3.Sun Yat Sen Univ, Sch Life Sci, Guangdong Prov Key Lab Plant Resources, Guangzhou 510275, Guangdong, Peoples R China
4.Univ Bonn, Inst Crop Sci & Resource Conservat INRES, Meckenheimer Allee 166A, D-53115 Bonn, Germany
5.Chinese Acad Sci, Xinjiang Inst Ecol & Geog, Key Lab Biogeog & Bioresource Arid Land, Urumqi 830011, Peoples R China
关键词： Bacillus lehensis; Bacillus oshimensis; Bacillus plakortidis; Bacillus rhizosphaerae; Bacillus clausii; Alkaliphilic Bacillus; Phylogenomics; Heterotypic synonym
期刊名称：ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY （ 影响因子：2.271； 五年影响因子：2.707 ）
ISSN： 0003-6072
年卷期： 2019 年 112 卷 12 期
页码：
收录情况： SCI
摘要： In the present study, phylogenetic and genome-based comparison was carried out to clarify the taxonomic positions of alkaliphilic Bacillus species, Bacillus plakortidis, Bacillus lehensis, Bacillus oshimensis, Bacillus rhizosphaerae and Bacillus clausii. Phylogenetic trees based on 16S rRNA gene sequences and concatenated protein marker genes were constructed. Average nucleotide identity (ANI) values were calculated to compare genetic relatedness. In phylogenetic trees, B. plakortidis DSM 19153(T), B. lehensis DSM 19099(T), and B. oshimensis DSM 18940(T); B. rhizosphaerae DSM 21911(T) and B. clausii DSM 8716(T) clade together. The average nucleotide identity (ANI) values between B. oshimensis DSM 18940(T), B. plakortidis DSM 19153(T) and B. lehensis DSM 19099(T) ranged from 98.7-98.8%, while the ANI values between B. rhizosphaerae DSM 21911(T) and B. clausii DSM 8716(T) were 95.2-95.5%. The ANI values were higher than the recognized threshold value for bacterial species delineation. Based on phylogenetic and genome comparison we propose reclassification of B. plakortidis and B. lehensis as a later heterotypic synonym of B. oshimensis; B. rhizosphaerae as a later heterotypic synonym of B. clausii.
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