SSR analysis reveals molecular variation and genetic diversity in Malus sieversii with different stress resistance levels in China
文献类型: 外文期刊
作者: Yu, Shaoshuai 1 ; Zhao, Wenxia 2 ; Yao, Yanxia 2 ; Huai, Wenxia 2 ; Cheng, Yuan 2 ; Zhou, Zhongfu 2 ; Xiao, Wenfa 2 ; Qin 1 ;
作者机构: 1.Chinese Acad Trop Agr Sci, Coconut Res Inst, Wenchang 571339, Peoples R China
2.Chinese Acad Forestry, Natl Forestry & Grassland Adm, Key Lab Forest Protect, Inst Forest Ecol Environm & Protect, Beijing 100091, Peoples R China
关键词: Chinese wild apple; Genetic variation; Microsatellite; Phylogeny; Resistant resource
期刊名称:HORTICULTURE ENVIRONMENT AND BIOTECHNOLOGY ( 影响因子:1.842; 五年影响因子:2.083 )
ISSN: 2211-3452
年卷期: 2019 年 60 卷 6 期
页码:
收录情况: SCI
摘要: Malus sieversii, a valuable crop in Xinjiang, China, is an important natural resource for researching the genetic diversity and phylogenetic evolution of the genus Malus worldwide. Samples from 152 M. sieversii individuals with different symptom grades of deadwood were collected from Gongliu and Xinyuan and analysed with 21 pairs of simple sequence repeat (SSR) primers, revealing molecular genetic characteristics and phylogeny of different groups and individuals. The samples showed high genetic diversity at the species level (N-a = 10.76, N-e = 4.37, H = 0.73, I = 1.65, H-o = 0.71, and H-e = 0.73). Variation was mainly found within groups with lower genetic differentiation (F-st = 0.092) and higher gene flow (N-m = 2.67). A total of 226 alleles were obtained, of which 25 exclusive alleles were from samples with < 40% deadwood rate, and 23 exclusive alleles were from samples with > 40% deadwood rate. Specific bands relating to individuals with deadwood rate < 10% (10 exclusive alleles) or > 60% (7 exclusive alleles) were amplified with 11 pairs of SSR primers. The number of exclusive alleles from M. sieversii plants collected in Gongliu was 52 and from those collected in Xinyuan was 24. Using unweighted pair-group method with arithmetic cluster analysis, the groups with different symptom grades from different sampling sites were shown to be clearly differentiated and formed several discrete subclades. Significantly, the six groups from Gongliu were further classified into two subclusters: Gongliu 1, including three groups with < 40% deadwood rate, and Gongliu 2, including three groups with > 40% deadwood rate.
- 相关文献
作者其他论文 更多>>
-
Combined Analysis of Metabolomics and Biochemical Changes Reveals the Nutritional and Functional Characteristics of Red Palm Weevil Rhynchophus ferrugineus (Coleoptera: Curculionidae) Larvae at Different Developmental Stages
作者:Chen, Mengran;Kan, Jintao;Zhang, Yufeng;Zhao, Jinhao;Lv, Chaojun;Zhong, Baozhu;Li, Chaoxu;Qin, Weiquan
关键词:red palm weevil larvae; untargeted metabolomics; nutrients; antioxidant activity
-
A Putative Ormycovirus That Possibly Contributes to the Yellow Leaf Disease of Areca Palm
作者:Niu, Xiaoqing;Qin, Weiquan;Xu, Zhongtian;Tian, Yujing;Xiao, Siyun;Xie, Yuan;Du, Zhenguo;Gao, Fangluan
关键词:areca palm; ormycovirus; ORFan; RNA-dependent RNA polymerase
-
Molecular Identification and Characterization of Novel Taxonomic Subgroups and New Host Plants in 16SrI and 16SrII Group Phytoplasmas and Their Evolutionary Diversity on Hainan Island, China
作者:Che, Haiyan;Zheng, Wenhu;Cao, Xueren;Luo, Daquan;Yu, Shaoshuai;Chen, Wang
关键词:classification; genetic diversity; host plants; identification; molecular detection; phytoplasma
-
Molecular Insights into Red Palm Weevil Resistance Mechanisms of Coconut (Cocos nucifera) Leaves
作者:Liu, Li;Yan, Wei;Liu, Bo;Qin, Weiquan
关键词:red palm weevil; Cocos nucifera; photosynthetic markers; metabolomics; transcriptomics
-
Comparative Study of Bolting Adaptability between 60Co-Induced Rape and Its Original Material
作者:Yan, Wei;Tan, Tailong;Chen, Hao;Zhang, Zhenqian;Tan, Tailong;Sun, Haiyan;Hui, Rongkui
关键词:fresh shoot; Co-60; physiological indexes; transcriptomics; metabolomics
-
Transcriptome sequencing of Cocos nucifera leaves in response to Rhynchophorus ferrugineus infestation
作者:Liu, Li;Yan, Wei;Liu, Bo
关键词:red palm weevil; ROS scavenging; herbivore; coconut; host-plant resistance; flavonoid biosynthesis
-
Molecular Identification and Characterization of Two Groups of Phytoplasma and Candidatus Liberibacter Asiaticus in Single or Mixed Infection of Citrus maxima on Hainan Island of China
作者:Yu, Shao-Shuai;Zhu, An-Na;Song, Wei-Wei;Yan, Wei;Zhu, An-Na
关键词:phytoplasma; Candidatus Liberibacter asiaticus; Citrus maxima; molecular identification; mixed infection



