DNA Fingerprinting of Vegetable Soybean Cultivar 'Zhexian No.9' using 101 New Developed HRM-Based SNP Markers
文献类型: 外文期刊
作者: Fu, X. J. 1 ; Pei, J. X. 1 ; Zheng, Yt 1 ; Guo, D. D. 1 ; Yang, Q. H. 1 ; Jin, H. X. 1 ; Zhu, D. H. 1 ; Dong, O. K. 1 ; Xu, 1 ;
作者机构: 1.Zhejiang Acad Agr Sci, Hangzhou Natl Sub Ctr Soybean Improvement, Inst Crop & Nucl Technol Utilizat, Hangzhou 310021, Zhejiang, Peoples R China
关键词: HRM; SNP fingerprint; Soybean; Zhexian No.9
期刊名称:LEGUME RESEARCH ( 影响因子:0.589; 五年影响因子:0.648 )
ISSN: 0250-5371
年卷期: 2020 年 43 卷 1 期
页码:
收录情况: SCI
摘要: Single nucleotide polymorphisms (SNPs) have been proved to be powerful markers in genetic analysis due to their high abundance and polymorphism in plant genomes. The recently developed high-resolution melting (HRM) analysis method provides a novel, quick, and close-tube PCR approach to analyze SNP variations. In present study, 101 HRM-based SNP markers from 20 soybean chromosomes were developed for genotyping vegetable soybean cultivar 'Zhexian No.9' with 'Williams 82' as reference. 33.7% of these markers were polymorphic between 'Zhexian No.9' and 'Williams 82'. Polymorphic markers were found on 85% (17 of 20) of the soybean chromosomes when comparing 'Zhexian No. 9' and 'Williams 82'. Finally, an array of 101 in-sequence nucleotide letters was generated as the first precise SNP fingerprint of 'Zhexian No.9'. The described marker-developing methodology could be used in other crops with known genomic information.
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