Genome-Wide Analysis of the GRF Family Reveals Their Involvement in Abiotic Stress Response in Cassava
文献类型： 外文期刊
作者： Shang, Sang 1 ; Wu, Chunlai 2 ; Huang, Chao; Tie, Weiwei 2 ; Yan, Yan 2 ; Ding, Zehong 2 ; Xia, Zhiqiang 2 ; Wang, Wen 1 ;
作者机构： 1.Hainan Univ, Trop Agr & Foresty Inst, Haikou 570228, Hainan, Peoples R China
2.Chinese Acad Trop Agr Sci, Key Lab Biol & Genet Resources Trop Crops, Inst Trop Biosci & Biotechnol, Haikou 571101, Hainan, Peoples R China
3.Chinese Acad Trop Agr
关键词： cassava; abiotic stress; gene expression; identification; GENERAL REGULATORY FACTOR (GRF) protein family
期刊名称：GENES （ 影响因子：4.096； 五年影响因子：4.339 ）
ISSN： 2073-4425
年卷期： 2018 年 9 卷 2 期
页码：
收录情况： SCI
摘要： GENERAL REGULATORY FACTOR (GRF) proteins play vital roles in the regulation of plant growth, development, and response to abiotic stress. However, little information is known for this gene family in cassava (Manihot esculenta). In this study, 15 MeGRFs were identified from the cassava genome and were clustered into the epsilon and the non-epsilon groups according to phylogenetic, conserved motif, and gene structure analyses. Transcriptomic analyses showed eleven MeGRFs with constitutively high expression in stems, leaves, and storage roots of two cassava genotypes. Expression analyses revealed that the majority of GRFs showed transcriptional changes under cold, osmotic, salt, abscisic acid (ABA), and H2O2 treatments. Six MeGRFs were found to be commonly upregulated by abiotic stress, ABA, and H2O2 treatments, which may be the converging points of multiple signaling pathways. Interaction network analysis identified 18 possible interactors of MeGRFs. Taken together, this study elucidates the transcriptional control of MeGRFs in tissue development and the responses of abiotic stress and related signaling in cassava. Some constitutively expressed, tissue-specific, and abiotic stress-responsive candidate MeGRF genes were identified for the further genetic improvement of crops.
- 相关文献
作者其他论文 更多>>
-
Physiological activities, transcriptomes and metabolomes of Pyropia yezoensis conchocelis unveil the roles of pyPGK, pyBCKDHA, and pyDLD in response to freshwater soaking
作者：Huang, Xueying;Li, Feng;He, Linwen;Huang, Xueying;Wang, Yu;Zhao, Hui;Li, Huiliang;Gu, Fenglin;Tan, Deguan;Hu, Wei;Guo, Anping;Ji, Changmian;Huang, Xueying;Wang, Yu;Zhao, Hui;Li, Huiliang;Gu, Fenglin;Tan, Deguan;Hu, Wei;Guo, Anping;Ji, Changmian;Wang, Yu;Zeng, Liwang
关键词：Pyropia yezoensis; Freshwater stress; Physiological activities; Transcriptome; Metabolome
-
Methyl jasmonate activated regulatory module Ma14-3-3e-MbHLH130-MbACO13/MbACS7 promoting ethylene biosynthesis and fruit ripening in banana
作者：Li, Meiying;Yan, Yan;Xie, Zhengnan;Ding, Zehong;Yang, Jinghao;Wang, Yu;Ma, Jianxiang;Huo, Kaisen;Yang, Xiaoliang;Xia, Qiyu;Ye, Xiao xue;Li, Chaochao;Jin, Zhiqiang;Hu, Wei;Ren, Licheng;Hu, Wei;Zeng, Liwang
关键词：MeJA; Banana fruit ripening; Ethylene biosynthesis; Ma14-3-3e; MabHLH130
-
Genome-wide analysis of autophagy-related genes (ATGs) in banana highlights MaATG8s in cell death and autophagy in immune response to Fusarium wilt (vol 36, pg 1237, 2017)
作者：Wei, Yunxie;Liu, Guoyin;Wu, Chunjie;Liu, Wei;Zeng, Hongqiu;He, Chaozu;Shi, Haitao;Wei, Yunxie;Liu, Guoyin;Wu, Chunjie;Liu, Wei;Zeng, Hongqiu;He, Chaozu;Shi, Haitao;Liu, Wen;Hu, Wei
关键词：
-
Integrated metabolomic and transcriptomic analyses revealed the overlapping response mechanisms of banana to cold and drought stress
作者：Xing, Junchao;Meng, Fanjuan;Xing, Junchao;Ye, Xiaoxue;Huo, Kaisen;Ding, Zehong;Tie, Weiwei;Xie, Zhengnan;Li, Chaochao;Hu, Wei;Xing, Junchao;Ye, Xiaoxue;Huo, Kaisen;Ding, Zehong;Tie, Weiwei;Xie, Zhengnan;Li, Chaochao;Hu, Wei;Xing, Junchao;Ye, Xiaoxue;Huo, Kaisen;Ding, Zehong;Tie, Weiwei;Xie, Zhengnan;Li, Chaochao;Hu, Wei
关键词：Abiotic stresses; Transcriptome; Metabolome; Carbohydrate; Amino acid; Flavonoid; Ascorbate
-
GenoBaits Cassava35K: high-resolution multi-SNP arrays for genetic analysis and molecular breeding using targeted sequencing and liquid chip technology
作者：Li, Chaochao;Ye, Xiaoxue;Jin, Zhongxin;Huo, Kaisen;Ma, Jiangxiang;Tie, Weiwei;Ding, Zehong;Hu, Wei;Li, Chaochao;Ye, Xiaoxue;Jin, Zhongxin;Huo, Kaisen;Ma, Jiangxiang;Tie, Weiwei;Ding, Zehong;Hu, Wei;Zhou, Yongfeng
关键词：
-
Comparative transcriptome analysis provides insights into ABA alleviating postharvest physiological deterioration of cassava
作者：Ye, Xiaoxue;Tao, Xiangru;Yan, Yan;Xie, Zhengnan;Yang, Jinghao;Wang, Yu;Li, Meiying;Kong, Hua;Hu, Wei;Ye, Xiaoxue;Yan, Yan;Xie, Zhengnan;Yang, Jinghao;Wang, Yu;Li, Meiying;Kong, Hua;Hu, Wei;Ye, Xiaoxue;Yan, Yan;Xie, Zhengnan;Yang, Jinghao;Wang, Yu;Li, Meiying;Kong, Hua;Hu, Wei;Xing, Junchao;Li, Yu;Zeng, Liwang;Wang, Ming;Fu, Naifang;Wan, Zhongqing;Ye, Jianqiu
关键词：Cassava; Postharvest physiological deterioration; Peroxidase; Transcription factor
-
The genomic and epigenomic landscapes of hemizygous genes across crops with contrasting reproductive systems
作者：Peng, Yanling;Wang, Yiwen;Liu, Yuting;Fang, Xinyue;Cheng, Lin;Long, Qiming;Su, Dalu;Zhang, Tianhao;Shi, Xiaoya;Xu, Xiaodong;Xu, Qi;Wang, Nan;Zhang, Fan;Liu, Zhongjie;Xiao, Hua;Huang, Sanwen;Zhou, Yongfeng;Yao, Jin;Tian, Ling;Hu, Wei;Chen, Songbi;Huang, Sanwen;Zhou, Yongfeng;Wang, Haibo;Gaut, Brandon S.
关键词：grapevine; clonal propagation; structural variation; integrative genomics; heterozygosity
