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Genome-Wide Association Study Reveals Both Overlapping and Independent Genetic Loci to Control Seed Weight and Silique Length in Brassica napus

文献类型： 外文期刊

作者： Dong, Hongli 1 ; Tan, Chuandong 1 ; Li, Yuzhen 1 ; He, Yan 1 ; Wei, Shuai 1 ; Cui, Yixin 1 ; Chen, Yangui 1 ; Wei, Dayong 2 ;

作者机构： 1.Southwest Univ, Coll Agron & Biotechnol, Chongqing, Peoples R China

2.Southwest Univ, Coll Hort & Landscape Architecture, Chongqing, Peoples R China

3.Zhejiang Acad Agr Sci, Inst Crop & Nucl Technol Utilizat, Hangzhou, Zhejiang, Peoples R China

4.Southwest Univ, Sch Comp & Informat Sci, Chongqing, Peoples R China

5.Southwest Univ, Acad Agr Sci, Chongqing, Peoples R China

关键词： Brassica napus; genome-wide association study; seed weight; silique length; BnaA.ARF18.a

期刊名称：FRONTIERS IN PLANT SCIENCE （ 影响因子：5.753； 五年影响因子：6.612 ）

ISSN： 1664-462X

年卷期： 2018 年 9 卷

页码：

收录情况： SCI

摘要： Seed weight (SW) is one of three determinants of seed yield, which positively correlates with silique length (SL) in Brassica napus (rapeseed). However, the genetic mechanism underlying the relationship between seed weight (SW) and silique length (SL) is largely unknown at present. A natural population comprising 157 inbred lines in rapeseed was genotyped by whole-genome re-sequencing and investigated for SW and SL over four years. The genome-wide association study identified 20 SNPs in significant association with SW on A01, A04, A09, C02, and C06 chromosomes and the phenotypic variation explained by a single locus ranged from 11.85% to 34.58% with an average of 25.43%. Meanwhile, 742 SNPs significantly associated with SL on A02, A03, A04, A07, A08, A09, C01, C03, C04, C06, C07, and C08 chromosomes were also detected and the phenotypic variation explained by a single locus ranged from 4.01 to 48.02% with an average of 33.33%, out of which, more than half of the loci had not been reported in the previous studies. There were 320 overlapping or linked SNPs for both SW and SL on A04, A09, and C06 chromosomes. It indicated that both overlapping and independent genetic loci controlled both SWand SL in B. napus. On the haplotype block on A09 chromosome, the allele variants of a known gene BnaA. ARF18. a controlling both SW and SL were identified in the natural population by developing derived cleaved amplified polymorphic sequence (dCAPS) markers. These findings are valuable for understanding the genetic mechanism of SW and SL and also for rapeseed molecular breeding programs.

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