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De novo genome assembly and analyses of 12 founder inbred lines provide insights into maize heterosis

文献类型: 外文期刊

作者: Wang, Baobao 1 ; Hou, Mei 1 ; Shi, Junpeng 3 ; Ku, Lixia 5 ; Song, Wei 1 ; Li, Chunhui 7 ; Ning, Qiang 9 ; Li, Xin 1 ; Li, Changyu 1 ; Zhao, Binbin 1 ; Zhang, Ruyang 7 ; Xu, Hua 1 ; Bai, Zhijing 1 ; Xia, Zhanchao 1 ; Wang, Hai 1 ; Kong, Dexin 10 ; Wei, Hongbin 10 ; Jing, Yifeng 10 ; Dai, Zhouyan 10 ; Wang, Hu Hailing 10 ; Zhu, Xinyu 10 ; Sun, Xuan 7 ; Wang, Shuaishuai 7 ; Yao, Wen 5 ; Hou, Gege 5 ; Qi, Zhi 2 ; Dai, He 11 ; Li, Xuming 11 ; Zheng, Hongkun 11 ; Zhang, Zhuxin 9 ; Li, Yu 8 ; Wang, Tianyu 8 ; Jiang, Taijiao 1 ; Wan, Zhaoman 1 ; Chen, Yanhui 5 ; Zhao, Jiuran 7 ; Lai, Jinsheng 3 ; Wang, Haiyang 10 ;

作者机构: 1.Chinese Acad Agr Sci, Biotechnol Res Inst, Beijing, Peoples R China

2.Inner Mongolia Univ, Key Lab Herbage & Endem Crop Biol, Minist Educ, Hohhot, Peoples R China

3.China Agr Univ, State Key Lab Plant Physiol & Biochem, Beijing, Peoples R China

4.China Agr Univ, Natl Maize Improvement Ctr, Dept Plant Genet & Breeding, Beijing, Peoples R China

5.Henan Agr Univ, Coll Agron, Zhengzhou, Peoples R China

6.Henan Agr Univ, Natl Key Lab Wheat & Maize Crop Sci, Zhengzhou, Peoples R China

7.Beijing Acad Agr & Forestry Sci, Maize Res Ctr, Beijing Key Lab Maize DNA Fingerprinting & Mol Bre, Beijing, Peoples R China

8.Chinese Acad Agr Sci, Inst Crop Sci, Beijing, Peoples R China

9.Huazhong Agr Univ, Natl Key Lab Crop Genet Improvement, Hubei Hongshan Lab, Wuhan, Peoples R China

10.South China Agr Univ, Guangdong Lab Lingnan Modern Agr, State Key Lab Conservat & Utilizat Subtrop Agrobio, Guangzhou, Peoples R China

11.Biomarker Technol Corp, Beijing, Peoples R China

期刊名称:NATURE GENETICS ( 影响因子:30.8; 五年影响因子:37.4 )

ISSN: 1061-4036

年卷期: 2023 年 55 卷 2 期

页码:

收录情况: SCI

摘要: Hybrid maize displays superior heterosis and contributes over 30% of total worldwide cereal production. However, the molecular mechanisms of heterosis remain obscure. Here we show that structural variants (SVs) between the parental lines have a predominant role underpinning maize heterosis. De novo assembly and analyses of 12 maize founder inbred lines (FILs) reveal abundant genetic variations among these FILs and, through expression quantitative trait loci and association analyses, we identify several SVs contributing to genomic and phenotypic differentiations of various heterotic groups. Using a set of 91 diallel-cross F-1 hybrids, we found strong positive correlations between better-parent heterosis of the F-1 hybrids and the numbers of SVs between the parental lines, providing concrete genomic support for a prevalent role of genetic complementation underlying heterosis. Further, we document evidence that SVs in both ZAR1 and ZmACO2 contribute to yield heterosis in an overdominance fashion. Our results should promote genomics-based breeding of hybrid maize. De novo genome assembly and analyses of 12 maize FILs provide insights into genomic and phenotypic differentiation of various heterotic groups and the molecular basis of heterosis in maize.

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