Complete chloroplast genome sequencing of ten wild Fragaria species in China provides evidence for phylogenetic evolution of Fragaria
文献类型： 外文期刊
作者： Sun, Jian 1 ; Sun, Rui 1 ; Liu, Huabo 1 ; Chang, Linlin 1 ; Li, Shuangtao 1 ; Zhao, Mizhen 4 ; Shennan, Carol 5 ; Lei, Ji 1 ;
作者机构： 1.Beijing Acad Forestry & Pomol Sci, Beijing 100093, Peoples R China
2.Beijing Engn Res Ctr Strawberry, Beijing 100093, Peoples R China
3.Minist Agr, Key Lab Biol & Genet Improvement Hort Crops North, Beijing 100093, Peoples R China
4.Jiangsu Acad Agr Sci, Inst Pomol, Nanjing 210014, Peoples R China
5.Univ Calif Santa Cruz, Environm Studies, Santa Cruz, CA 95064 USA
6.Shenyang Agr Univ, Dept Hort, Shenyang 110866, Peoples R China
关键词： Fragaria; Wild species; Chloroplast genome; Phylogeny
期刊名称：GENOMICS （ 影响因子：5.736； 五年影响因子：4.939 ）
ISSN： 0888-7543
年卷期： 2021 年 113 卷 3 期
页码：
收录情况： SCI
摘要： Complete chloroplast genomes of ten wild Fragaria species native to China were sequenced. Phylogenetic analysis clustered Fragaria species into two clades: The south clade (F. iinumae, F. chinensis, F. pentaphylla, F. nilgerrensis, F. daltoniana, F. corymbosa, F. moupinensis, F. tibetica, F. nipponica, F. gracilis, and F. nubicola and north clade (F. viridis, F. orientalis, F. moschata, F. mandshurica, F. vesca, F. chiloensis, F. virginiana, and F. x ananassa), while F. iinumae is the oldest extant species. Molecular clock analysis suggested present Fragaria species share a common ancestor 3.57 million years ago (Ma), F. moschata and octoploid species evolve 0.89 and 0.97 Ma, respectively, but F. moschata be not directly involved in current octoploid species formation. Drastic global temperature change since the Palaeocene-Eocene, approx. 55 Ma, especially during uplifting of the QinghaiTibet plateau and quaternary glaciation may have driven the formation of Fragaria, separation of two groups and polyploidization
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