您好，欢迎访问河北省农林科学院 机构知识库！
河北省农林科学院机构知识库

全部

  • 全部
  • 标题
  • 学者
  • 机构
  • 关键词

Genetic Diversity and Population Structure of Chinese Foxtail Millet [Setaria italica (L.) Beauv.] Landraces

文献类型： 外文期刊

作者： Wang, Chunfang 1 ; Jia, Guanqing 1 ; Zhi, Hui 1 ; Niu, Zhengang 1 ; Chai, Yang 1 ; Li, Wei 1 ; Wang, Yongfang 1 ; Li, Hai 1 ;

作者机构： 1.Chinese Acad Agr Sci, Inst Crop Sci, Natl Key Facil Crop Gene Resources & Genet Improv, Beijing 100081, Peoples R China

2.Hebei Acad Agr & Forestry Sci, Inst Millet Crops, Shijiazhuang 050031, Peoples R China

3.Hebei Normal Univ, Coll Life Sci, Shijiazhuang 050012, Peoples R China

4.Hebei Teachers Co

关键词： foxtail millet;landrace;population structure;linkage disequilibrium

期刊名称：G3-GENES GENOMES GENETICS （ 影响因子：3.154； 五年影响因子：3.369 ）

ISSN： 2160-1836

年卷期： 2012 年 2 卷 7 期

页码：

收录情况： SCI

摘要： As an ancient cereal of great importance for dryland agriculture even today, foxtail millet (Setaria italica) is fast becoming a new plant genomic model crop. A genotypic analysis of 250 foxtail millet landraces, which represent 1% of foxtail millet germplasm kept in the Chinese National Gene Bank (CNGB), was conducted with 77 SSRs covering the foxtail millet genome. A high degree of molecular diversity among the landraces was found, with an average of 20.9 alleles per locus detected. STRUCTURE, neighbor-jointing, and principal components analyses classify the accessions into three clusters (topmost hierarchy) and, ultimately, four conservative subgroups (substructuring within the topmost clusters) in total, which are in good accordance with eco-geographical distribution in China. The highest subpopulation diversity was identified in the accessions of Pop3 from the middle regions of the Yellow River, followed by accessions in Pop1 from the downstream regions of the Yellow River, suggesting that foxtail millet was domesticated in the Yellow River drainage area first and then spread to other parts of the country. Linkage disequilibrium (LD) decay of less than 20 cM of genetic distance in the foxtail millet landrace genome was observed, which suggests that it could be possible to achieve resolution down to the 20 cM level for association mapping.

  • 相关文献

[1]CLONING AND SEQUENCE ANALYSIS OF A PUTATIVE CCT-MOTIF GENE IN TEN FOXTAIL MILLET CULTIVARS. Jia, X. P.,Fan, B. Y.,Zhang, G. N.,Shi, G. A.,Hou, D. Y.,Bai, J. Y.,Quan, J. Z.,Dong, Z. P.. 2016

[2]Bioinformatic analysis of the nucleotide binding site-encoding disease-resistance genes in foxtail millet (Setaria italica (L.) Beauv.). Zhu, Y. B.,Dong, J. G.,Zhu, Y. B.,Li, Z. Y.,Bai, H.,Dong, L.,Dong, Z. P.,Xie, X. Q.. 2014

[3]DEVELOPMENT OF STS MARKERS FOR WAXY GENE ALLELIC VARIATION IDENTIFICATION IN FOXTAIL MILLET. Jia, X. P.,Dong, P. H.,Yu, F. Y.,Quan, J. Z.,Bai, H.,Dong, Z. P.. 2015

[4]Combined small RNA and degradome sequencing to identify miRNAs and their targets in response to drought in foxtail millet. Wang, Yongqiang,Li, Lin,Diao, Xianmin,Tang, Sha,Zhi, Hui,Jia, Guanqing,Diao, Xianmin,Wang, Yongqiang,Liu, Jianguang,Zhang, Hanshuang. 2016

[5]Geographical variation of nuclear genome RFLPs and genetic differentiation in foxtail millet, Setaria italica (L.) P. Beauv.. Fukunaga, K,Wang, ZM,Kato, K,Kawase, M. 2002

[6]Assessment of Genetic Relationship of Foxtail Millet with Its Wild Ancestor and Close Relatives by ISSR Markers. Li Wei,Zhi Hui,Wang Yong-fang,Li Hai-quan,Diao Xian-min,Zhi Hui,Diao Xian-min. 2012

[7]Genome-wide analysis of the lectin receptor-like kinase family in foxtail millet (Setaria italica L.). Zhao, Wan,Zhao, Shu-Ping,Zhang, Xiao-Hong,Min, Dong-Hong,Liu, Yong-Wei,Zhou, Ji-Ming.

[8]Genetic Diversity and Population Structure of Elite Foxtail Millet [Setaria italica (L.) P. Beauv.] Germplasm in China. Liu, Zhengli,Bai, Guihua,Zhang, Dadong,Zhu, Chengsong,Liu, Zhengli,Xia, Xueyan,Cheng, Ruhong,Shi, Zhigang,Bai, Guihua.

作者其他论文 更多>>
置顶
购物车
反馈

© 京ICP备09089781号-29 主办单位：河北省农林科学院

学术资源： 中国农业科学院 农业专业知识服务系统 农科联盟资源共建共享平台 中国农业科技文献与信息服务平台 中国农业期刊集成服务平台