Transcriptomic, metabolomic, and ATAC-seq analysis reveal the regulatory mechanism of senescence of post-harvest tomato fruit
文献类型： 外文期刊
作者： Guo, Susu 1 ; Ji, Yanhai 2 ; Zheng, Yanyan 2 ; Watkins, Christopher B. 6 ; Ma, Lili 7 ; Wang, Qing 2 ; Liang, Hao 2 ; Bai, Chunmei 2 ; Fu, Anzhen 2 ; Li, Ling 7 ; Meng, Demei 1 ; Liu, Mingchi 2 ; Zuo, Jinhua 2 ;
作者机构： 1.Tianjin Univ Sci & Technol, Coll Food Sci & Engn, State Key Lab Food Nutr & Safety, Tianjin, Peoples R China
2.Beijing Acad Agr & Forestry Sci, Inst Agriprod Proc & Food Nutr, Key Lab Vegetable Postharvest Proc, Minist Agr, Beijing, Peoples R China
3.Beijing Acad Agr & Forestry Sci, Inst Agriprod Proc & Food Nutr, Beijing Key Lab Fruits & Vegetable Storage & Proc, Beijing, Peoples R China
4.Beijing Acad Agr & Forestry Sci, Inst Agriprod Proc & Food Nutr, Key Lab Biol & Genet Improvement Hort Crops North, Minist Agr, Beijing, Peoples R China
5.Beijing Acad Agr & Forestry Sci, Inst Agriprod Proc & Food Nutr, Beijing Vegetable Res Ctr, Key Lab Urban Agr North Minist Agr, Beijing, Peoples R China
6.Cornell Univ, Coll Agr & Life Sci, Sch Integrat Plant Sci, Hort Sect, Ithaca, NY USA
7.Tianjin Agr Univ, Coll Food Sci & Biotechnol, Tianjin, Peoples R China
关键词： storage; tomato; transcriptome; metabolome; ATAC-seq; transcription factor
期刊名称：FRONTIERS IN PLANT SCIENCE （ 影响因子：5.6； 五年影响因子：6.8 ）
ISSN： 1664-462X
年卷期： 2023 年 14 卷
页码：
收录情况： SCI
摘要： Several physiological changes occur during fruit storage, which include the regulation of genes, metabolisms and transcription factors. In this study, we compared 'JF308' (a normal tomato cultivar) and 'YS006' (a storable tomato cultivar) to determine the difference in accumulated metabolites, gene expression, and accessible chromatin regions through metabolome, transcriptome, and ATAC-seq analysis. A total of 1006 metabolites were identified in two cultivars. During storage time, sugars, alcohols and flavonoids were found to be more abundant in 'YS006' compared to 'JF308' on day 7, 14, and 21, respectively. Differentially expressed genes, which involved in starch and sucrose biosynthesis were observed higher in 'YS006'. 'YS006' had lower expression levels of CesA (cellulose synthase), PL (pectate lyase), EXPA (expansin) and XTH (xyglucan endoglutransglucosylase/hydrolase) than 'JF308'. The results showed that phenylpropanoid pathway, carbohydrate metabolism and cell wall metabolism play important roles in prolonging the shelf life of tomato (Solanum lycopersicum) fruit. The ATAC-seq analysis revealed that the most significantly up-regulated transcription factors during storage were TCP 2,3,4,5, and 24 in 'YS006' compared to 'JF308' on day 21. This information on the molecular regulatory mechanisms and metabolic pathways of post-harvest quality changes in tomato fruit provides a theoretical foundation for slowing post-harvest decay and loss, and has theoretical importance and application value in breeding for longer shelf life cultivars.
- 相关文献
作者其他论文 更多>>
-
Telomere-to-telomere genome assembly of eggplant ( Solanum melongena L.) promotes gene fine localization of the green stripe (GS) in pericarp
作者：Fang, Huarong;Wu, Jie;Xie, Liang;Li, Yizhiqi;Huang, Jingjing;Yan, Xiaoyun;He, Xuehan;Deng, Wentao;Li, Ruirui;Yu, Wenjin;Wang, Peng;Chen, Jie;Ji, Yanhai;Wen, Changlong
关键词：Eggplant; T2T genome; Green stripe
-
Multiomics analyses of the effects of LED white light on the ripening of apricot fruits
作者：Bai, Chunmei;Ma, Lili;Jiang, Yuanye;Wu, Caie;Bai, Chunmei;Zheng, Yanyan;Ma, Lili;Jiang, Yuanye;Chen, Shaoqing;Wang, Hongwei;He, Xuelian;Han, Lichun;Zhou, Xinyuan;Wang, Qing;Zuo, Jinhua;Watkins, Christopher Brian
关键词：Light-emitting diodes; Transcriptomics; Metabolomics; ATAC-Seq
-
Para-coumaric acid and cinnamic acid enhance resistance of Agaricus bisporus s mushrooms to Brown blotch disease caused by Pseudomonas tolaasii
作者：Shi, Zixuan;Song, Rui;Zhang, Lei;Jiang, Hanyue;Jiao, Lu;Yuan, Shuai;Meng, Demei;Zheng, Yanyan;Chen, Lin
关键词：Bacterial disease; Edible mushroom; Induced resistance; Phenolic acid; Storage
-
Storage temperature affects metabolism of sweet corn
作者：Liu, Shiyu;Zhou, Xinyuan;Wang, Yunxiang;Wang, Qing;Ma, Lili;Zuo, Jinhua;Zheng, Yanyan;Liu, Shiyu;Wu, Cai'e;Wang, Ronghuan;Shi, Yaxing;Watkins, Christopher B.
关键词：Transcriptome; Metabolome; Texture; Phytohormone; Quality
-
Integrated transcriptomic and miRNA-seq analysis of Pak-choi provides insight into the molecular mechanisms involved in the preservation of postharvest quality by white LED light irradiation
作者：Yan, Zhicheng;Yan, Bangjin;Xu, Dongying;Yuan, Shuzhi;Xu, Xiaodi;Shi, Junyan;Zuo, Jinhua;Yue, Xiaozhen;Wang, Qing;Yan, Zhicheng;Wu, Caie;Shi, Junyan
关键词：Ascorbic acid; Cell wall metabolism; Glucosinolates; Photosynthesis; Transcription factor
-
Multi-omic analysis provides new insights into the regulatory mechanism of the LED-induced delay of postharvest senescence and yellowing in broccoli
作者：Wang, Zhiqiang;Lv, Jieyu;Bin, Yuqi;Duan, Wenhui;Shi, Junyan;Gao, Hongdou;Yuan, Shuzhi;Yue, Xiaozhen;Zuo, Jinhua;Wang, Qing;Lv, Jieyu;Duan, Wenhui;Xu, Xiangbin;Wang, Zhiqiang;Li, Xiaojiao
关键词：Broccoli; Red LED light irradiation; Postharvest; Gene expression; Oxidative stress
-
Elevated temperature has more pronounced effect on anthesis tomato plant than cadmium stress and reduced nitrogen supply
作者：Zhou, Rong;Yu, Xiaqing;Li, Yankai;Jiang, Fangling;Wu, Zhen;Zhou, Rong;Kristensen, Hanne Lakkenborg;Ottosen, Carl-Otto;Ji, Yanhai;Song, Xiaoming
关键词：Tomato; Leaf gas exchange and metabolomics; Elevated temperature; Nitrogen nutrient; Cadmium stress
