Comparative analysis of chloroplast genomes in Vasconcellea pubescens A.DC. and Carica papaya L.
文献类型： 外文期刊
作者： Lin, Zhicong 1 ; Zhou, Ping 3 ; Ma, Xinyi 2 ; Deng, Youjin 2 ; Liao, Zhenyang 2 ; Li, Ruoyu 1 ; Ming, Ray 1 ;
作者机构： 1.Fujian Agr & Forestry Univ, Fujian Prov Key Lab Haixia Appl Plant Syst Biol, Ctr Genom & Biotechnol, Coll Agr, Fuzhou 350002, Fujian, Peoples R China
2.Fujian Agr & Forestry Univ, Coll Life Sci, Fuzhou 350002, Fujian, Peoples R China
3.Fujian Acad Agr Sci, Fruit Res Inst, Fuzhou 350013, Fujian, Peoples R China
4.Univ Illinois, Dept Plant Biol, Urbana, IL 61801 USA
期刊名称：SCIENTIFIC REPORTS （ 影响因子：4.379； 五年影响因子：5.133 ）
ISSN： 2045-2322
年卷期： 2020 年 10 卷 1 期
页码：
收录情况： SCI
摘要： The chloroplast genome is an integral part of plant genomes in a species along with nuclear and mitochondrial genomes, contributing to adaptation, diversification, and evolution of plant lineages. In the family Caricaceae, only the Carica papaya chloroplast genome and its nuclear and mitochondrial genomes were sequenced, and no chloroplast genome-wide comparison across genera was conducted. Here, we sequenced and assembled the chloroplast genome of Vasconcellea pubescens A.DC. using Oxford Nanopore Technology. The size of the genome is 158,712 bp, smaller than 160,100 bp of the C. papaya chloroplast genome. And two structural haplotypes, LSC_IRa_SSCrc_IRb and LSC_IRa_SSC_IRb, were identified in both V. pubescens and C. papaya chloroplast genomes. The insertion-deletion mutations may play an important role in Ycf1 gene evolution in family Caricaceae. Ycf2 is the only one gene positively selected in the V. pubescens chloroplast genome. In the C. papaya chloroplast genome, there are 46 RNA editing loci with an average RNA editing efficiency of 63%. These findings will improve our understanding of the genomes of these two crops in the family Caricaceae and will contribute to crop improvement.
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