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Genetic dissection of a major locus SC9.1 conferring seed color in broomcorn millet (Panicum miliaceum)

文献类型： 外文期刊

作者： Liu, Tianpeng 1 ; Dong, Kongjun 1 ; He, Jihong 1 ; Wang, Mei 3 ; Ren, Ruiyu 1 ; Zhang, Lei 1 ; Li, Yawei 1 ; Liu, Minxuan 4 ; Yang, Tianyu 1 ;

作者机构： 1.Gansu Acad Agr Sci, Crop Res Inst, Lanzhou 730070, Peoples R China

2.Minist Agr & Rural Affairs, Coconstruct Minist & Prov, Key Lab Crop Gene Resources & Germplasm Innovat No, Lanzhou 730070, Peoples R China

3.Gansu Agr Univ, Coll Life Sci & Technol, Lanzhou 730070, Peoples R China

4.Chinese Acad Agr Sci, Inst Crop Sci, Beijing 100081, Peoples R China

关键词： Broomcorn millet; Seed color; BSA-seq; Fine mapping; Transcriptome; Haplotype

期刊名称：THEORETICAL AND APPLIED GENETICS （ 影响因子：4.2； 五年影响因子：4.9 ）

ISSN： 0040-5752

年卷期： 2025 年 138 卷 1 期

页码：

收录情况： SCI

摘要： Key messageA major locus SC9.1 was identified and finely mapped into a 92.68 Kb region, and longmi004412 was identified as the casual gene regulating brown seed color in broomcorn millet.AbstractBroomcorn millet is a cereal crop with abundant genetic variations in morphology, agronomy, and yield-related traits. The diversity of seed color is among the most distinctive morphological characteristics. However, genetic determinants governing seed coloration have rarely been reported. Here, the F2 and F3 populations from a cross between Longmi12 and Zhang778 were employed to elucidate the genetic basis of seed color. Statistical analysis conducted on the seed color in F1, F2, and F3 progeny conclusively demonstrated that brown seed color was controlled by a single dominant locus in broomcorn millet. The genetic control locus, SC9.1, was preliminarily located on chromosome 9 in the 32,175,878-44,281,406 bp region through bulked segregant analysis sequencing (BSA-seq). Furthermore, SC9.1 was narrowed down to a 92.68 kb interval harboring 11 genes using fine mapping with 260 recessive individual genotypes. Combined with gene structural variation, the transcriptome profile, and functional comparison, longmi004412 was identified as the causal gene resulting in brown seed color formation in broomcorn millet. In addition, haplotype analysis of the longmi004412 gene in 516 accessions was performed to clarify the types for broomcorn millet seed color. These findings lay the foundation for precise identification of germplasm at the molecular level, molecular-assisted selection breeding, and the application of gene editing technology in broomcorn millet.

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