De novo transcriptome analysis in Dendrobium and identification of critical genes associated with flowering
文献类型： 外文期刊
作者： Chen, Yue 1 ; Shen, Qi 3 ; Lin, Renan 2 ; Zhao, Zhuangliu 2 ; Shen, Chenjia 4 ; Sun, Chongbo 1 ;
作者机构： 1.Zhejiang Acad Agr Sci, Inst Hort, Hangzhou, Zhejiang, Peoples R China
2.Yueqing Forestry Varieties Tech Ctr, Yueqing, Zhejiang, Peoples R China
3.Zhejiang Acad Agr Sci, Plant Protect & Microbiol, Hangzhou, Zhejiang, Peoples R China
4.Hangzhou Normal Univ, Coll Life & Environm Sci, Hangzhou 310036, Zhejiang, Peoples R China
关键词： Dendrobium;Flowering;Orchids;qRT-PCR;Transcriptome
期刊名称：PLANT PHYSIOLOGY AND BIOCHEMISTRY （ 影响因子：4.27； 五年影响因子：4.816 ）
ISSN： 0981-9428
年卷期： 2017 年 119 卷
页码：
收录情况： SCI
摘要： Artificial control of flowering time is pivotal for the ornamental value of orchids including the genus Dendrobium. Although various flowering pathways have been revealed in model plants, little information is available on the genetic regualtion of flowering in Dendrobium. To identify the critical genes associated with flowering, transcriptomes from four organs (leaf, root, stem and flower) of D. officinale were analyzed in our study. In total, 2645 flower-specific transcripts were identified. Functional annotation and classification suggested that several metabolic pathways, including four sugar-related pathways and two fatty acid-related pathways, were enriched. A total of 24 flowering-related transcripts were identified in D. officinale according to the similarities to their homologous genes from Arabidopsis, suggesting that most classical flowering pathways existed in D. officinale. Furthermore, phylogenetic analysis suggested that the FLOWERING LOCUS T homologs in orchids are highly conserved during evolution process. In addition, expression changes in nine randomly-selected critical flowering-related transcripts between the vegetative stage and reproductive stage were quantified by qRT-PCR analysis. Our study provided a number of candidate genes and sequence resources for investigating the mechanisms underlying the flowering process of the Dendrobium genus. (C) 2017 Published by Elsevier Masson SAS.
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