1A cluster of transcripts identifies a transition stage initiating leafy head growth in heading morphotypes of Brassica

作者： Zhang, Kang; Yang, Yinqing; Wu, Jian; Liang, Jianli; Chen, Shumin; Zhang, Lei; Lv, Honghao; Yin, Xiaona; Zhang, Xin; Zhang, Yiyue; Zhang, Lingkui; Zhang, Yangyong; Wang, Xiaowu; Cheng, Feng; Freeling, Michael; SCI

机构： Chinese Acad Agr Sci, Inst Vegetables & Flowers, Key Lab Biol & Genet Improvement Hort Crops, Sino Dutch Joint Lab Hort Genom,Minist Agr & Rura, Beijing, Peoples R China; Univ Calif Berkeley, Dept Plant & Microbial Biol, Berkeley, CA 94720 USA;

来源：PLANT JOURNAL

关键词： leafy head; Brassica; Chinese cabbage; cabbage; transcriptome; transition stage; ethylene; temperature response

年份：2022

2The lack of negative association between TE load and subgenome dominance in synthesized Brassica allotetraploids

作者： Zhang, Kang; Zhang, Lingkui; Cui, Yinan; Yang, Yinqing; Wu, Jian; Liang, Jianli; Li, Xing; Zhang, Xin; Zhang, Yiyue; Guo, Zhongwei; Zhang, Lei; Chen, Shumin; Wang, Xiaowu; Cheng, Feng; Cui, Yinan; Ruan, Jue; Freeling, Michael; SCI

机构： Chinese Acad Agr Sci, State Key Lab Vegetable Biobreeding, Inst Vegetables & Flowers,Key Lab Biol & Genet Im, Minist Agr & Rural Affairs,Sino Dutch Joint Lab H, Beijing 100081, Peoples R China; Chengde Acad Agr & Forestry Sci, Chengde 067032, Peoples R China; Chinese Acad Agr Sci, Guangdong Lab Lingnan Modern Agr, Shenzhen Branch,Agr Genom Inst Shenzhen, Genome Anal Lab,Minist Agr & Rural Affairs, Shenzhen 518120, Peoples R China; Univ Calif Berkeley, Dept Plant & Microbial Biol, Berkeley, CA 94720 USA;

来源：PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

关键词： subgenome dominance; polyploidization; methylation; transposon

年份：2023

3Origin, inheritance, and gene regulatory consequences of genome dominance in polyploids

作者： Woodhouse, Margaret R.; Cheng, Feng; Lisch, Damon; Freeling, Michael; Cheng, Feng; Wang, Xiaowu; Pires, J. Chris; SCI

机构： Univ Calif Berkeley, Dept Plant & Microbial Biol, Berkeley, CA 94720 USA; Chinese Acad Agr Sci, Inst Vegetables & Flowers, Beijing 100081, Peoples R China; Univ Missouri, Div Biol Sci, Columbia, MO 65211 USA;

来源：PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

关键词： Origin inheritance a typical flowering tetraploidies the two

4Escape from preferential retention following repeated whole genome duplications in plants

作者： Schnable, James C.; Freeling, Michael; Wang, Xiaowu; Pires, J. Chris; SCI

机构： Univ Calif Berkeley, Freeling Lab, Berkeley, CA 94720 USA; Chinese Acad Agr Sci, Inst Vegetables & Flowers, Dept Biotechnol, Mol Genet Lab, Beijing 100193, Peoples R China; Univ Missouri, Bond Life Sci Ctr, Columbia, MO USA;

来源：FRONTIERS IN PLANT SCIENCE

关键词： polyploidy gene dosage gene loss genome evolution comparative genomics crucifers grasses

年份：2012

5The Fate of Arabidopsis thaliana Homeologous CNSs and Their Motifs in the Paleohexaploid Brassica rapa

作者： Subramaniam, Sabarinath; Freeling, Michael; Wang, Xiaowu; Pires, J. Chris; SCI

机构： Univ Calif Berkeley, Dept Plant & Microbial Biol, Berkeley, CA 94720 USA; Chinese Acad Agr Sci, Inst Vegetables & Flowers, Beijing 100193, Peoples R China; Univ Missouri, Div Biol Sci, Columbia, MO 65211 USA;

来源：GENOME BIOLOGY AND EVOLUTION

关键词： conserved noncoding sequence CNS fractionation mutagenesis deletion G-box PIL5 Arabidopsis Brassica rapa

年份：2013

6Altered Patterns of Fractionation and Exon Deletions in Brassica rapa Support a Two-Step Model of Paleohexaploidy

作者： Tang, Haibao; Tang, Haibao; Woodhouse, Margaret R.; Schnable, James C.; Pedersen, Brent S.; Freeling, Michael; Cheng, Feng; Wang, Xiaowu; Conant, Gavin; Conant, Gavin; Pires, J. Chris; Pires, J. Chris; SCI

机构： J Craig Venter Inst, Rockville, MD 20850 USA; Univ Calif Berkeley, Dept Plant & Microbial Biol, Berkeley, CA 94720 USA; Chinese Acad Agr Sci, Inst Vegetables & Flowers, Beijing 100081, Peoples R China; Univ Missouri, Div Anim Sci, Columbia, MO 65211 USA; Univ Missouri, Inst Informat, Columbia, MO 65211 USA; Univ Missouri, Div Biol Sci, Columbia, MO 65211 USA;

来源：GENETICS

7Epigenetic regulation of subgenome dominance following whole genome triplication in Brassica rapa

作者： Cheng, Feng; Sun, Chao; Wu, Jian; Liang, Jianli; Cai, Chengcheng; Wang, Xiaowu; Schnable, James; Woodhouse, Margaret R.; Freeling, Michael; SCI

机构： Chinese Acad Agr Sci, Inst Vegetables & Flowers, Beijing 100081, Peoples R China; Univ Nebraska, Dept Agron & Hort, Lincoln, NE 68588 USA; Univ Calif Berkeley, Dept Plant & Microbial Biol, Berkeley, CA 94720 USA;

来源：NEW PHYTOLOGIST

关键词： Brassica rapa hybrid vigor small RNAs subgenome dominance transposon elements

8Gene retention, fractionation and subgenome differences in polyploid plants

作者： Cheng, Feng; Wu, Jian; Cai, Xu; Liang, Jianli; Wang, Xiaowu; Freeling, Michael; Wang, Xiaowu; SCI

机构： Chinese Acad Agr Sci, Minist Agr, Inst Vegetables & Flowers,Sino Dutch Joint Lab Ho, Key Lab Biol & Genet Improvement Hort Crops, Beijing, Peoples R China; Univ Calif Berkeley, Dept Plant & Microbial Sci, Berkeley, CA 94720 USA; Shandong Shouguang Vegetable Seed Ind Grp Co Ltd, Shandong Prov Key Lab Protected Vegetable Mol Bre, Shouguang, Shandong, Peoples R China;

来源：NATURE PLANTS

年份：2018

9The Brassica genome

作者： Wang, Xiaowu; Freeling, Michael; SCI

机构： Chinese Acad Agr Sci, Inst Vegetables & Flowers, Beijing 100193, Peoples R China; Univ Calif Berkeley, Berkeley, CA 94720 USA;

来源：FRONTIERS IN PLANT SCIENCE

年份：2013

10Impacts of allopolyploidization and structural variation on intraspecific diversification in Brassica rapa

作者： Cai, Xu; Chang, Lichun; Zhang, Tingting; Chen, Haixu; Zhang, Lei; Lin, Runmao; Liang, Jianli; Wu, Jian; Wang, Xiaowu; Freeling, Michael; SCI

机构： Chinese Acad Agr Sci, Inst Vegetables & Flowers, Beijing 100081, Peoples R China; Univ Calif Berkeley, Dept Plant & Microbial Biol, Berkeley, CA 94720 USA;

来源：GENOME BIOLOGY

年份：2021