Impact of FecB Mutation on Ovarian DNA Methylome in Small-Tail Han Sheep
文献类型: 外文期刊
第一作者: Xie, Lingli
作者: Xie, Lingli;Miao, Xiangyang;Luo, Qingmiao;Zhao, Huijing;Qin, Xiaoyu
作者机构:
关键词: sheep; epigenetics; ovary; methylation; fecundity
期刊名称:GENES ( 影响因子:3.5; 五年影响因子:3.9 )
ISSN:
年卷期: 2023 年 14 卷 1 期
页码:
收录情况: SCI
摘要: Booroola fecundity (FecB) gene, a mutant of bone morphogenetic protein 1B (BMPR-1B) that was discovered in Booroola Merino, was the first prolificacy gene identified in sheep related to increased ovulation rate and litter size. The mechanism of FecB impact on reproduction is unclear. Methods: In this study, adult Han ewes with homozygous FecB(B)/FecB(B) mutations (Han BB group) and ewes with FecB(+)/FecB(+) wildtype (Han ++ group) were selected. Methylated DNA immunoprecipitation and high-throughput sequencing (MeDIP-seq) was used to identify differences in methylated genes in ovary tissue. Results: We examined differences in DNA methylation patterns between HanBB and Han ++ sheep. In both sheep, methylated reads were mainly distributed at the gene body regions, CpG islands and introns. The differentially methylated genes were enriched in neurotrophy in signaling pathway, Gonadotropin Releasing Hormone (GnRH) signaling pathway, Wnt signaling pathway, oocyte meiosis, vascular endothelial growth factor (VEGF) signaling pathway, etc. Differentially-methylated genes were co-analyzed with differentially-expressed mRNAs. Several genes which could be associated with female reproduction were identified, such as FOXP3 (forkhead box P3), TMEFF2 (Transmembrane Protein with EGF Like and Two Follistatin Like Domains 2) and ADAT2 (Adenosine Deaminase TRNA Specific 2). Conclusions: We constructed a MeDIP-seq based methylomic study to investigate the ovarian DNA methylation differences between Small-Tail Han sheep with homozygous FecB mutant and wildtype, and successfully identified FecB gene-associated differentially-methylated genes. This study has provided information with which to understand the mechanisms of FecB gene-induced hyperprolificacy in sheep.
分类号:
- 相关文献
作者其他论文 更多>>
-
Relationships Between Oat Phenotypes and UAV Multispectral Imagery Under Different Water Deficit Conditions by Structural Equation Modelling
作者:Feng, Yayang;Wang, Guoshuai;Wang, Jun;Zheng, Hexiang;Miao, Xiangyang;Feng, Yayang;Sun, Xiulu;Li, Peng;Wang, Guoshuai;Wang, Jun;Zheng, Hexiang;Miao, Xiangyang;Li, Yan;Jia, Yanhui
关键词:oat phenotype; water deficit; UAV multispectral imagery; vegetation index; structural equation model (SEM)
-
Integrated analysis of microRNA and mRNA interactions regulating fecundity in the ovaries of two distinct sheep breeds
作者:Yousuf, Salsabeel;Feng, Hui;Liu, Tianyi;Xie, Lingli;Miao, Xiangyang;Malik, Waqar Afzal
关键词:miRNA; Sheep; Ovine tissue; Transcriptome; Fecundity; Ovary
-
A chromosome-level genome assembly and annotation of the Pseudorasbora elongata (Cypriniformes: Cyprinidae)
作者:Wang, Pan;Yin, Denghua;Jiang, Min;Xie, Lingli;Liu, Jie;Shao, Yan;Liu, Kai;Chen, Yukuan;Liu, Kai;Wang, Xinyue
关键词:
-
Exploring the Water-Soil-Crop Dynamic Process and Water Use Efficiency of Typical Irrigation Units in the Agro-Pastoral Ecotone of Northern China
作者:Wang, Guoshuai;Miao, Xiangyang;Xu, Bing;Tian, Delong;Ren, Jie;Li, Zekun;Zheng, Hexiang;Wang, Jun;Tang, Pengcheng;Zhou, Jie;Wang, Guoshuai;Miao, Xiangyang;Xu, Bing;Tian, Delong;Ren, Jie;Li, Zekun;Zheng, Hexiang;Wang, Jun;Tang, Pengcheng;Zhou, Jie;Miao, Xiangyang;Xu, Bing;Li, Ruiping;Zheng, Hexiang;Zhou, Jie;Feng, Yayang;Xu, Zhiwei
关键词:agro-pastoral ecotone of Northern China; the different forage crops; DSSAT model; soil water dynamics; crop growth processes; crop evapotranspiration; water productivity
-
Identification and analysis of lncRNA, miRNA and mRNA related to subcutaneous and intramuscular fat in Laiwu pigs
作者:Feng, Hui;Liu, Tianyi;Yousuf, Salsabeel;Zhang, Xiuxiu;Huang, Wanlong;Li, Ai;Xie, Lingli;Miao, Xiangyang
关键词:lncRNA; co-expression; ceRNA network; intramuscular fat; adipogenesis
-
Comparative analysis of alternative splicing events in skeletal muscle of different sheep
作者:Miao, Xiangyang;Luo, Qingmiao;Zhao, Huijing;Qin, Xiaoyu
关键词:Sheep; Muscle; Alternative splicing; RNA-seq; mRNAs
-
Genome wide identification and characterization of fertility associated novel CircRNAs as ceRNA reveal their regulatory roles in sheep fecundity
作者:Yousuf, Salsabeel;Feng, Hui;Liu, Tianyi;Xie, Lingli;Miao, Xiangyang;Malik, Waqar Afzal
关键词:Non-coding RNAs; Competitive endogenous RNA (ceRNA); Reproduction; Genomic organization; Expression profiling