ATP-Dependent Clp Protease Subunit C1, HvClpC1, Is a Strong Candidate Gene for Barley Variegation Mutant luteostrians as Revealed by Genetic Mapping and Genomic Re-sequencing
文献类型： 外文期刊
第一作者： Li, Mingjiu
作者： Li, Mingjiu;Pidon, Helene;Melzer, Michael;Stein, Nils;Guo, Ganggang;Prina, Alberto R.;Boerner, Thomas;Stein, Nils
作者机构：
关键词： chloroplast development; genetic mapping; genomic re-sequencing; comparative analysis; luteostrians; albostrians; HvClpC1; Hordeum vulgare
期刊名称：FRONTIERS IN PLANT SCIENCE （ 影响因子：4.402； 五年影响因子：5.207 ）
ISSN： 1664-462X
年卷期： 2021 年 12 卷
页码：
收录情况： SCI
摘要： Implementation of next-generation sequencing in forward genetic screens greatly accelerated gene discovery in species with larger genomes, including many crop plants. In barley, extensive mutant collections are available, however, the causative mutations for many of the genes remains largely unknown. Here we demonstrate how a combination of low-resolution genetic mapping, whole-genome resequencing and comparative functional analyses provides a promising path toward candidate identification of genes involved in plastid biology and/or photosynthesis, even if genes are located in recombination poor regions of the genome. As a proof of concept, we simulated the prediction of a candidate gene for the recently cloned variegation mutant albostrians (HvAST/HvCMF7) and adopted the approach for suggesting HvClpC1 as candidate gene for the yellow-green variegation mutant luteostrians.
分类号：
- 相关文献
作者其他论文 更多>>
-
Leveraging a phased pangenome for haplotype design of hybrid potato
作者：Cheng, Lin;Wang, Nan;Bao, Zhigui;Yang, Yuting;Wang, Pei;Zhang, Zhiyang;Tang, Die;Zhang, Pingxian;Wu, Yaoyao;Zhou, Yao;Zheng, Yi;Hu, Yong;Lian, Qun;Ma, Zhaoxu;Zhang, Chunzhi;Zhou, Yongfeng;Huang, Sanwen;Cheng, Lin;Lassois, Ludivine;Wang, Nan;Zhou, Yongfeng;Huang, Sanwen;Bao, Zhigui;Zhou, Qian;Guarracino, Andrea;Garrison, Erik;Tang, Die;Wu, Yaoyao;Zhou, Yao;Lucas, William J.;Stein, Nils;Stein, Nils;Staedler, Thomas;Staedler, Thomas
关键词：
-
Barley2035: A decadal vision for barley research and breeding
作者：Jiang, Congcong;Kan, Jinhong;Gao, Guangqi;Wu, Wenxue;Yang, Ping;Dockter, Christoph;Li, Chengdao;Stein, Nils;Stein, Nils
关键词：barley; genomics; pre-breeding; gene editing; hybrid breeding; Triticeae
-
Genome analyses and breeding of polyploid crops
作者：Cheng, Lin;Kong, Qianqian;Zhou, Qian;Cheng, Lin;Huang, Sanwen;Cheng, Lin;Lassois, Ludivine;Bao, Zhigui;Stein, Nils;Stein, Nils;Huang, Sanwen;Zhou, Qian
关键词：
-
Acyl-CoA-binding protein (ACBP) genes involvement in response to abiotic stress and exogenous hormone application in barley (Hordeum vulgare L.)
作者：Chang, Huayu;Ma, Minhu;Gu, Mingzhou;Li, Mengrun;Xing, Guofang;Chang, Huayu;Ma, Minhu;Li, Shanshan;Guo, Ganggang
关键词：Barley stress response; Acyl-CoA-binding protein (ACBP); Gene expression pattern
-
Structural variation in the pangenome of wild and domesticated barley
作者：Jayakodi, Murukarthick;Pidon, Helene;Rabanus-Wallace, M. Timothy;Guo, Yu;Feng, Jia-Wu;Feser, Manuel;Fiebig, Anne;Himmelbach, Axel;Hoffie, Iris;Hoffie, Robert E.;Koenig, Patrick;Knauft, Manuela;Koppolu, Ravi;Kumlehn, Jochen;Marone, Marina P.;Melzer, Michael;Padmarasu, Sudharsan;Rutten, Twan;Schueler, Danuta;Scholz, Uwe;Trautewig, Corinna;Mascher, Martin;Stein, Nils;Lu, Qiongxian;Braune, Katarzyna;Jorgensen, Morten Egevang;Kale, Sandip M.;Murozuka, Emiko;Pedas, Pai Rosager;Skadhauge, Birgitte;Thomsen, Hanne C.;Nielsen, Martin Toft Simmelsgaard;Voss, Cynthia;Rasmussen, Magnus Wohlfahrt;Dockter, Christoph;Pidon, Helene;Bayer, Micha;Guo, Wenbin;Ramsay, Luke;Schreiber, Miriam;Simpson, Craig;Waugh, Robbie;Zhang, Runxuan;Lux, Thomas;Gundlach, Heidrun;Haberer, Georg;Kamal, Nadia;Mayer, Klaus F. X.;Spannagl, Manuel;Jaegle, Benjamin;Keller, Beat;Wicker, Thomas;Badea, Ana;Bekele, Wubishet;Brar, Gurcharn S.;Bunk, Boyke;Chalmers, Kenneth J.;Langridge, Peter;Chapman, Brett;Hu, Haifei;Li, Chengdao;Wang, Penghao;Westcott, Sharon;Zhang, Xiao-Qi;Hansson, Mats;Hu, Haifei;Isobe, Sachiko;Sato, Kazuhiro;Shirasawa, Kenta;Keeble-Gagnere, Gabriel;Tibbits, Josquin F.;Krattinger, Simon G.;Li, Chengdao;Li, Chengdao;Maurer, Andreas;Pillen, Klaus;Schmutzer, Thomas;Stein, Nils;Mayer, Klaus F. X.;Muehlbauer, Gary J.;Perovic, Dragan;Pin, Pierre A.;Vequaud, Dominique;Pozniak, Curtis J.;Pozniak, Curtis J.;Sakuma, Shun;Sato, Kazuhiro;Steffenson, Brian J.;Waugh, Robbie;Mascher, Martin;Brar, Gurcharn S.;Kale, Sandip M.
关键词：
-
Natural variations of HvSRN1 modulate the spike rachis node number in barley
作者：Fan, Chaofeng;Xu, Dongdong;Wang, Chunchao;Chen, Zhaoyan;Dou, Tingyu;Guo, Aikui;Zhao, Meng;Pei, Honghong;Zhao, Mengwei;Zhang, Renxu;Wang, Ke;Zhang, Jing;Guo, Ganggang;Fan, Chaofeng;Xu, Dongdong;Ni, Zhongfu;Qin, Dandan
关键词：barley; fine-mapping; grain number; kernel weight
-
Origin and evolution of the bread wheat D genome
作者：Cavalet-Giorsa, Emile;Gonzalez-Munoz, Andrea;Athiyannan, Naveenkumar;Gardener, Catherine;Perera, Ana B.;Hu, Chia-Yi;Yu, Guotai;Ahmed, Hanin Ibrahim;Laquai, Konstanze D.;Rivera, Luis F.;Chen, Renjie;Wang, Yajun;Abrouk, Michael;Wulff, Brande B. H.;Krattinger, Simon G.;Holden, Samuel;Abbasi, Mehrdad;Li, Meng;Kumar, Naveen;Brar, Gurcharn S.;Salhi, Adil;Gao, Xin;Bougouffa, Salim;Quiroz-Chavez, Jesus;Chayut, Noam;Ghosh, Sreya;Uauy, Cristobal;Rustamova, Samira M.;Elkot, Ahmed Fawzy;Patpour, Mehran;Rasheed, Awais;Rasheed, Awais;Mao, Long;Mao, Long;Lagudah, Evans S.;Periyannan, Sambasivam K.;Sharon, Amir;Himmelbach, Axel;Reif, Jochen C.;Knauft, Manuela;Mascher, Martin;Stein, Nils;Mascher, Martin;Stein, Nils;Perovic, Dragan;Putra, Alexander;Liu, Sanzhen;Raupp, W. John;Raupp, W. John;Olson, Eric L.;Lee, Jong-Yeol;Chhuneja, Parveen;Kaur, Satinder;Zhang, Peng;Park, Robert F.;Ding, Yi;Liu, Deng-Cai;Li, Wanlong;Nasyrova, Firuza Y.;Dvorak, Jan;Meyer, Wilku B.;Boshoff, Willem H. P.;Steffenson, Brian J.;Matny, Oadi;Sharma, Parva K.;Tiwari, Vijay K.;Grewal, Surbhi;Pozniak, Curtis J.;Chawla, Harmeet Singh;Ens, Jennifer;Dunning, Luke T.;Kolmer, James A.;Lazo, Gerard R.;Xu, Steven S.;Gu, Yong Q.;Xu, Xianyang;Periyannan, Sambasivam K.;Ahmed, Hanin Ibrahim;Wang, Yajun;Chawla, Harmeet Singh;Brar, Gurcharn S.
关键词：
