Integration of metabolome and transcriptome reveals flavonoid accumulation in the intergeneric hybrid between Brassica rapa and Raphanus sativus
文献类型: 外文期刊
第一作者: Zhang, Libin
作者: Zhang, Libin;Chao, Hongbo;Xia, Heng;Yin, Yongtai;Li, Maoteng;Ma, Chuang;Long, Yan;Wu, Jiangsheng;Li, Zaiyun;Ge, Xianhong;Batley, Jacqueline
作者机构:
期刊名称:SCIENTIFIC REPORTS ( 影响因子:4.379; 五年影响因子:5.133 )
ISSN: 2045-2322
年卷期: 2019 年 9 卷
页码:
收录情况: SCI
摘要: Brassica rapa and Raphanus sativus are two important edible vegetables that contain numerous nutritional ingredients. However, the agronomic traits and nutritional components of the intergeneric hybrid of B. rapa and R. sativus remain poorly understood. In this study, we used a stably inherited intergeneric hybrid of B. rapa and R. sativus as a model to study its metabolome and transcriptome profiles. Morphological and cytological analysis showed the intergeneric hybrid had the expected chromosome number and normal meiosis behavior. Moreover, the metabolome analysis showed multiple important secondary metabolites, including flavonoids and glucosinolates, were significantly upregulated in the hybrid. Furthermore, transcriptome data revealed that the expression level of the important genes involved in phenylpropanoid and flavonoid pathways was significantly upregulated in the hybrid. Ultimately, our data indicate the intergeneric hybrid will be a valuable bioengineering resource and promise to become a new-type hybrid vegetable with great medicinal value in future.
分类号:
- 相关文献
作者其他论文 更多>>
-
MicrobiomeStatPlots: Microbiome statistics plotting gallery for meta-omics and bioinformatics
作者:Bai, Defeng;Ma, Chuang;Xun, Jiani;Luo, Hao;Yang, Haifei;Lyu, Hujie;Gai, Anran;Yousuf, Salsabeel;Gao, Yunyun;Wang, Yao;Liu, Yong-Xin;Ma, Chuang;Yang, Haifei;Lyu, Hujie;Zhu, Zhihao;Gai, Anran;Peng, Kai;Xu, Shanshan;Gao, Yunyun
关键词:bioinformatics; interpretation; microbiome; multi-omics; visualization
-
The role of pangenomics in orphan crop improvement
作者:Hu, Haifei;Zhao, Junliang;Hu, Haifei;Zhao, Junliang;Hu, Haifei;Zhao, Junliang;Thomas, William J. W.;Batley, Jacqueline;Edwards, David;Edwards, David
关键词:
-
EasyMetagenome: A user-friendly and flexible pipeline for shotgun metagenomic analysis in microbiome research
作者:Bai, Defeng;Xun, Jiani;Ma, Chuang;Luo, Hao;Yang, Haifei;Hou, Huiyu;Lv, Hujie;Wan, Xiulin;Wang, Yao;Yousuf, Salsabeel;Zeng, Meiyin;Zhang, Tianyuan;Gao, Yunyun;Liu, Yong-Xin;Chen, Tong;Ma, Chuang;Yang, Haifei;Cao, Chen;Cao, Xiaofeng;Cui, Jianzhou;Deng, Yuan-Ping;Deng, Zhaochao;Yu, Hao;Zhang, Chunfang;Dong, Wenxin;Dong, Wenxue;Du, Juan;Fang, Qunkai;Fang, Wei;Fang, Yue;Luan, Yaning;Fu, Fangtian;Fu, Min;Fu, Yi-Tian;Gao, He;Ge, Jingping;Guo, Yuhao;Gong, Qinglong;Lou, Wenbo;Gu, Lunda;Yang, Li;Guo, Peng;Hai, Tang;Liu, Hao;He, Jieqiang;He, Zi-Yang;Huang, Can;Ji, Shuai;Jiang, ChangHai;Jiang, Gui-Lai;Jiang, Lingjuan;Jin, Ling N.;Li, Changchao;Kan, Yuhe;Kang, Da;Kou, Jin;Lam, Ka-Lung;Li, Chong;Li, Fuyi;Li, Liwei;Li, Miao;Li, Xin;Li, Ye;Li, Zheng-Tao;Zhu, Chengshuai;Liang, Jing;Mo, Jiayuan;Lin, Yongxin;Liu, Changzhen;Liu, Danni;Zhang, Jing;Chen, Shifu;Liu, Fengqin;Liu, Jia;Liu, Tianrui;Liu, Tingting;Wang, Xinlong;Liu, Xinyuan;Luo, Yuanyuan;Liu, Yaqun;Liu, Bangyan;Liu, Minghao;Lv, Hujie;Ma, Tengfei;Mai, Zongjiong;Niu, Dongze;Pan, Zhuo;Qi, Heyuan;Shi, Zhanyao;Song, Chunjiao;Sun, Fuxiang;Sun, Yan;Tian, Sihui;Wang, Guoliang;Wang, Hongyang;Wang, Hongyu;Wang, Huanhuan;Wang, Jing;Wang, Jun;Wang, Kang;Wang, Leli;Yao, Xiaofang;Wang, Shao-kun;Xiao, Zufei;Xing, Huichun;Xu, Yifan;Yang, Song;Yan, Shu-yan;Zhang, Yi-Bo;Yang, Yuanming;Lei, Yu;Yuan, Zhengrong;Zhang, Chunge;Zhang, Huimin;Zhang, Na;Zhang, Yupeng;Zhang, Zheng;Zhou, Mingda;Zhou, Yuanping;Zhu, Zhihao;Zhu, Lin;Zhu, Yue;Zou, Hongqin;Zuo, Anna;Dong, Wenxuan;Wen, Tao;Chen, Shifu;Chen, Shifu;Li, Guoliang
关键词:metagenome; microbiome; microbiota; pipeline; visualization
-
Largest genome assembly in Brassicaceae: retrotransposon-driven genome expansion and karyotype evolution in Matthiola incana
作者:Chen, Daozong;Chen, Haidong;Wan, Shubei;Lu, Zhanjun;Tan, Chen;Yang, Taihua;Zhang, Xiaohan;Huang, Fan;Liu, Chao;Ge, Xianhong;Yang, Taihua;Lei, Yong;Jiang, Huifang;Liao, Boshou;King, Graham J.;Lysak, Martin A.;Lysak, Martin A.
关键词:genome assembly; genome obesity; Lineage III; Hesperodae; Cruciferae; retrotransposons
-
A rare dominant allele DYSOC1 determines seed coat color and improves seed oil content in Brassica napus
作者:Li, Huaixin;Wu, Mingli;Yin, Yongtai;Xia, Yutian;Cheng, Xin;Chen, Kang;Yan, Shuxiang;Xiong, Yiyi;He, Jianjie;Fan, Shipeng;Ding, Yiran;Zhang, Libin;Jia, Haibo;Li, Maoteng;Chao, Hongbo;Yin, Yongtai;Wang, Xiaodong;Zhang, Libin;Zhang, Chunyu
关键词:
-
Development of Brassica rapa-nigra monosomic alien addition lines: cytology, genetics, and morphology
作者:Li, Pengfei;Wu, Haiyan;Wang, Shunlin;Zhang, Mimi;Guo, Shizhen;Ge, Xianhong;Li, Zaiyun;Liu, Mengyang;Ma, Wei;Zhao, Jianjun;Tan, Chen;Cui, Cheng
关键词:
-
Rapid Identification of Alien Chromosome Fragments and Tracing of Bioactive Compound Genes in Intergeneric Hybrid Offspring Between Brassica napus and Isatis indigotica Based on AMAC Method
作者:Guo, Yanhong;Guo, Yanhong;Han, Yutian;Gao, Jinxiang;Luo, Yanqing;Zhao, Kaiqin;Li, Genze;Zu, Feng;Han, Yutian;Cheng, Xiaomao;Ge, Xianhong
关键词:
Brassica napus ;Isatis indigotica ; distant hybridization; intron polymorphism (IP); SSR; AMAC method; alien chromosome