Identification of a Cry1Fa binding site of cadherin in Plutella xylostella through fragment exchanging and molecular docking methods
文献类型: 外文期刊
第一作者: Gao, Meijing
作者: Gao, Meijing;Hu, Xiaodan;Zhang, Xiao;Zhong, Jianfeng;Lu, Lina;Liu, Yuan;Liu, Xianjin;Dong, Sa;Wang, Yun
作者机构:
关键词: Cryl Fa; Cad herin; Binding sites; Fragment exchanging; Molecular docking
期刊名称:INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES ( 影响因子:6.953; 五年影响因子:6.737 )
ISSN: 0141-8130
年卷期: 2020 年 146 卷
页码:
收录情况: SCI
摘要: Binding to the cadherin in target pests is the primary step in the action mechanism of Cry toxins, but little is known regarding the interaction of Cry1Fa with cadherin. Our previous study suggested that a Plutella xylostella cadherin fragment (PxCad-TBR) can bind to Cry1Fa, while its homologous fragment (HaCad-TBR) in Helicoverpa armigera cannot. In this study, we expressed two cadherin fragments that combine parts of PxCad-TBR and HaCad-TBR in Escherichia coli and tested their binding to the Cry1Fa. The results showed that the fragment containing amino acids T1202-A1341 of P. xylostella cadherin showed binding ability to Cry1Fa. Furthermore, two regions (V1219-E1233 and D1326-F1337) were predicted as hot spot regions that are involved in the interaction of Cry1Fa and PxCad-TBR with computer-aided molecular docking. We then constructed two PxCad-TBR mutations by fragment exchanging based on the molecular docking results and verified the mutations' binding abilities to the Cry1Fa. The results showed that the region that contains amino acids D1326-F1337 was one important binding site to Cry1Fa in P. xylostella cadherin. These results suggested that a combination of computer-aided molecular docking and fragment exchanging is an effective way to locate the key binding sites of Bt toxins in receptors. (C) 2019 Elsevier B.V. All rights reserved.
分类号:
- 相关文献
作者其他论文 更多>>
-
Combined detection of foodborne pathogens in irrigation water in Jiangsu, China
作者:Xie, Yajing;Zhang, Cunzheng;Liu, Xianjin;Xie, Yajing;Lu, Jiayao;Liu, Xianjin;Li, Bin;Fan, Bochao;Li, Dandi;Du, Xuefei;Xie, Yajing;Schmidt, Stefan
关键词:Irrigation water; Foodborne pathogens; Combined detection; Noroviruses; Strawberry production
-
A fast and efficient virtual screening and identification strategy for helix peptide binders based on finDr webserver: A case study of bovine serum albumin (BSA)
作者:Bu, Jiarui;Luo, Na;Liu, Yuan;Luo, Chuping;Zhang, Xiao;Bu, Jiarui;Luo, Na;Shen, Cheng;Xu, Chongxin;Zhu, Qing;Chen, Chengyu;Xie, Yajing;Liu, Xianjin;Liu, Yuan;Zhang, Xiao
关键词:Virtual screening; Affinity identification; Molecular simulations
-
A colorimetric and SERS dual-signal immunochromatography based on AuDTNB@PDA nanoparticles for the detection of triadimefon
作者:Dong, Sa;Zhu, Zixin;Shi, Qiuyun;Zhang, Yu;Feng, Jianguo;Wang, Yulong;Luo, Ruifeng
关键词:Triadimefon residue; Immunochromatographic strip; Colorimetric; SERS; Dual-signal
-
Impact of Hormone on Growth and GA3 Regulation of Anthocyanin Biosynthesis in Suspension-Culture Cells of Cyclocarya paliurus
作者:Pan, Chuanqing;Liu, Yuan;Chen, Jiguang;Yin, Zhongping;Tang, Daobang
关键词:anthocyanin; Cyclocarya paliurus; gibberellin A(3); multi-omics; plant cell culture
-
Spatiotemporal Variations in Phytoplankton Community Structure and Diversity: A Case Study for a Macroalgae-Oyster Reef Ecosystem
作者:Xu, Min;Yang, Linlin;Xu, Min;Wang, Yun;Shen, Jiabin;Yang, Linlin;Zhao, Qi;Xu, Yufu;Wang, Shenzhi;Zhang, Haipeng;Yu, Yingbo;Zhang, Yunling;Otaki, Takayoshi;Komatsu, Teruhisa;Xu, Kaida
关键词:phytoplankton; Luanhe River Estuary; sea ranch; oyster; macroalgae; community structure
-
Synergistic use of stay-green traits and UAV multispectral information in improving maize yield estimation with the random forest regression algorithm
作者:Liu, Yuan;Meng, Lin;Nie, Chenwei;Liu, Yadong;Song, Yang;Jin, Xiuliang;Liu, Yuan;Fan, Kaijian;Meng, Lin;Nie, Chenwei;Liu, Yadong;Song, Yang;Jin, Xiuliang;Cheng, Minghan
关键词:UAV multispectral; Maize yield; Stay-Green Index (SGI); Machine learning; Remote sensing
-
Effects of Lysophospholipids on the Antioxidant Capacity, Digestive Performance, and Intestinal Microbiota of Litopenaeus vannamei
作者:Yan, Hailiang;Liang, Hong;Yan, Hailiang;Wang, Yun;Liang, Hong;Duan, Yafei;Wang, Jun;Zhou, Chuanpeng;Wang, Yun;Duan, Yafei;Wang, Jun;Zhou, Chuanpeng;Wang, Yun;Huang, Zhong
关键词:Litopenaeus vannamei; lysophospholipids; antioxidant capacity; digestion; intestinal microbiota