Genome-Wide Detection of SNP Markers Associated with Four Physiological Traits in Groundnut (Arachis hypogaea L.) Mini Core Collection

文献类型： 外文期刊

第一作者： Shaibu, Abdulwahab S.

作者： Shaibu, Abdulwahab S.;Miko, Zainab L.;Mohammed, Sanusi G.;Shaibu, Abdulwahab S.;Sneller, Clay;Motagi, Babu N.;Ajeigbe, Hakeem A.;Motagi, Babu N.;Motagi, Babu N.;Chepkoech, Jackline;Chepngetich, Mercy;Isa, Adamu M.;Mohammed, Sanusi G.

作者机构：

关键词： DArTseq; groundnut; linkage disequilibrium; marker-assisted selection; marker-trait association; physiological traits

期刊名称：AGRONOMY-BASEL （ 影响因子：3.417； 五年影响因子：3.64 ）

ISSN：

年卷期： 2020 年 10 卷 2 期

页码：

收录情况： SCI

摘要： In order to integrate genomics in breeding and development of drought-tolerant groundnut genotypes, identification of genomic regions/genetic markers for drought surrogate traits is essential. We used 3249 diversity array technology sequencing (DArTSeq) markers for a genetic analysis of 125 ICRISAT groundnut mini core collection evaluated in 2015 and 2017 for genome-wide marker-trait association for some physiological traits and to determine the magnitude of linkage disequilibrium (LD). Marker-trait association (MTA) analysis, probability values, and percent variation modelled by the markers were calculated using the GAPIT package via the KDCompute interface. The LD analysis showed that about 36% of loci pairs were in significant LD (p < 0.05 and r(2) > 0.2) and 3.14% of the pairs were in complete LD. The MTAs studies revealed 20 significant MTAs (p < 0.001) with 11 markers. Four MTAs were identified for leaf area index, 13 for canopy temperature, one for chlorophyll content and two for normalized difference vegetation index. The markers explained 20.8% to 6.6% of the phenotypic variation observed. Most of the MTAs identified on the A subgenome were also identified on the respective homeologous chromosome on the B subgenome. This could be due to a common ancestor of the A and B genome which explains the linkage detected between markers lying on different chromosomes. The markers identified in this study can serve as useful genomic resources to initiate marker-assisted selection and trait introgression of groundnut for drought tolerance after further validation.

分类号：

  • 相关文献
作者其他论文 更多>>

微信小程序