文献类型： 外文期刊
第一作者： Ji, ChiHai
作者： Ji, ChiHai;Wei, YingFang;Wang, ZhiYuan;Chen, YongJie;Mai, ZhanZhuo;Cai, MengKai;Qin, ChenXiao;Cai, Yu;Yi, HeYou;Liang, Guan;Lu, Gang;Gong, Lang;Zhang, GuiHong;Wang, Heng;Ji, ChiHai;Wei, YingFang;Chen, YongJie;Zhang, GuiHong;Wang, Heng;Ji, ChiHai;Wei, YingFang;Wang, ZhiYuan;Chen, YongJie;Mai, ZhanZhuo;Cai, MengKai;Qin, ChenXiao;Cai, Yu;Yi, HeYou;Liang, Guan;Lu, Gang;Gong, Lang;Zhang, GuiHong;Wang, Heng;Ji, ChiHai;Wei, YingFang;Wang, ZhiYuan;Chen, YongJie;Mai, ZhanZhuo;Qin, ChenXiao;Cai, Yu;Yi, HeYou;Liang, Guan;Gong, Lang;Zhang, GuiHong;Wang, Heng;Ji, ChiHai;Wei, YingFang;Wang, ZhiYuan;Chen, YongJie;Mai, ZhanZhuo;Qin, ChenXiao;Cai, Yu;Yi, HeYou;Liang, Guan;Gong, Lang;Zhang, GuiHong;Wang, Heng;Jiang, JingZhe;Cai, MengKai
作者机构：
关键词： African swine fever virus (ASFV); genome; virome; virus-like particle; whole genome sequencing
期刊名称：FRONTIERS IN VETERINARY SCIENCE （ 影响因子：3.471； 五年影响因子：3.821 ）
ISSN：
年卷期： 2021 年 8 卷
页码：
收录情况： SCI
摘要： In 2018, there was an outbreak of African swine fever (ASF) in China, which spread to other provinces in the following 3 years and severely damaged China's pig industry. ASF is caused by the African swine fever virus (ASFV). Given that the genome of the African swine fever virus is very complex and whole genome information is currently inadequate, it is important to efficiently obtain virus genome sequences for genomic and epidemiological studies. The prevalent ASFV strains have low genetic variability; therefore, whole genome sequencing analysis provides a basis for the study of ASFV. We provide a method for the efficient sequencing of whole genomes, which requires only a small number of tissues. The database construction method was selected according to the genomic types of ASFV, and the whole ASFV genome was obtained through data filtering, host sequence removal, virus classification, data assembly, virus sequence identification, statistical analysis, gene prediction, and functional analysis. Our proposed method will facilitate ASFV genome sequencing and novel virus discovery.
分类号：
- 相关文献
作者其他论文 更多>>
-
Staphylococcus pseudintermedius induces pyroptosis of canine corneal epithelial cells by activating the ROS-NLRP3 signalling pathway
作者：Wang, Zhihao;Guo, Long;Yuan, Changning;Zhu, Chengcheng;Li, Jun;Mao, Peng;Li, Jianji;Cui, Luying;Dong, Junsheng;Liu, Kangjun;Meng, Xia;Zhu, Guoqiang;Wang, Heng;Wang, Zhihao;Guo, Long;Yuan, Changning;Zhu, Chengcheng;Li, Jun;Mao, Peng;Li, Jianji;Cui, Luying;Dong, Junsheng;Liu, Kangjun;Meng, Xia;Zhu, Guoqiang;Wang, Heng;Wang, Zhihao;Guo, Long;Yuan, Changning;Zhu, Chengcheng;Li, Jun;Mao, Peng;Li, Jianji;Cui, Luying;Dong, Junsheng;Liu, Kangjun;Meng, Xia;Zhu, Guoqiang;Wang, Heng;Zhong, Haoran
关键词：Staphylococcus pseudintermedius; canine corneal epithelial cells; intracellular infection; pyroptosis; NLRP3 inflammasome; reactive oxygen species
-
The genomic history and global migration of a windborne pest
作者：Hu, Qing-Ling;Zhuo, Ji-Chong;Lu, Jia-Bao;Lu, Gang;Huang, Hai-Jian;Li, Jun-Min;Chen, Jian-Ping;Zhang, Chuan-Xi;Hu, Qing-Ling;Ye, Yu-Xuan;Li, Dan-Ting;Lou, Yi-Han;Zhang, Xiao-Ya;Chen, Xuan;Wang, Si-Liang;Wang, Zhe-Chao;Ansari, Naved Ahmad;Zhu, Zeng-Rong;Heong, Kong Luen;Zhang, Chuan-Xi;Fang, Gang-Qi;Zhang, Yi-Xiang;Zhan, Shuai;Fang, Gang-Qi;Zhang, Yi-Xiang;Zhan, Shuai;Mazlan, Norida;Mazlan, Norida;Oo, San San;Thet, Thet;Sharma, Prem Nidhi;Jauharlina, Jauharlina;Sukorini, Ir Henik;Ibisate, Michael T.;Rahman, S. M. Mizanur;Ansari, Naved Ahmad;Chen, Ai-Dong;Zhu, Zeng-Rong
关键词：
-
Colonization characteristics and dynamic transition of archaea communities on polyethylene and polypropylene microplastics in the sediments of mangrove ecosystems
作者：Wang, Qiong;Zheng, Gang;Ni, Lingfang;Li, Weiye;Zheng, Daoqiong;Wu, Jiaping;Zhang, Dongdong;Wang, Qiong;Zheng, Daoqiong;Zhang, Dongdong;Wang, Qiong;Guo, Peng;Wang, Yi;Zheng, Gang;Wang, Heng;Zhang, Dongdong
关键词：Mangrove sediments; Microplastics; Archaeal biomarker; Methanogens; Assembly mechanism
-
Identification and classification of the genomes of novel microviruses in poultry slaughterhouse
作者：Xie, Keming;Sun, Xinyu;Pan, Jingqi;Qiu, Suiping;Yuan, Xiaoqi;Liang, Mengshi;Jiang, Jingzhe;Yuan, Lihong;Xie, Keming;Zhu, Peng;Liu, Chang;Liu, Guangfeng;Jiang, Jingzhe;Lin, Benfu;Zhu, Peng;Cao, Xudong
关键词：poultry slaughterhouse; microviruses; genome; clustering; host
-
Genetic Analysis of Cotton Fiber Traits in Gossypium Hybrid Lines
作者：Wang, Heng;Cai, Xiaoyan;Umer, Muhammad Jawad;Xu, Yanchao;Hou, Yuqing;Zheng, Jie;Liu, Fang;Wang, Kunbo;Zhou, Zhongli;Chen, Mengshan;Ma, Shuping;Yu, Jingzhong;Cai, Xiaoyan;Zheng, Jie;Liu, Fang;Liu, Fang;Cai, Xiaoyan;Hou, Yuqing;Zheng, Jie;Liu, Fang
关键词：
-
The antioxidant activity and metabolomic analysis of the supernatant of Streptococcus alactolyticus strain FGM
作者：Gu, Xueyan;Wang, Heng;Wang, Lei;Zhang, Kang;Tian, Yuhu;Wang, Xiaoya;Xu, Guowei;Guo, Zhiting;Ahmad, Saad;Egide, Hanyurwumutima;Liu, Jiahui;Li, Jianxi;Zhang, Jingyan;Savelkoul, Huub F. J.;Zhang, Jingyan;Wang, Xuezhi
关键词：S. alactolyticus strain FGM; Antioxidant activity; Metabolomic analysis; Supernatant; Oxidative stress
-
Donkey-like kirkovirus is associated with diarrhea in piglets
作者：Tong, Panpan;Dang, Yueyi;Pan, Juanjuan;Kuang, Ling;Xie, Jinxin;Wang, Zunbao;Wang, Zunbao;Song, Guangwei;Li, Junhui;Zhang, Lei;Song, Xiaozhen;Li, Junhui;Lu, Gang;Xie, Jinxin
关键词：Kirkovirus; Pigleta; Diarrheic disease
