GRABSEEDS: extraction of plant organ traits through image analysis

文献类型： 外文期刊

第一作者： Tang, Haibao

作者： Tang, Haibao;Tang, Haibao;Kong, Wenqian;Paterson, Andrew H.;Nabukalu, Pheonah;Lomas, Johnathan S.;Yim, Won Cheol;Moser, Michel;Zhang, Jisen;Jiang, Mengwei;Zhang, Xingtan

作者机构：

关键词： Image analysis; Phenotype; Seed traits; High throughput; QTL mapping

期刊名称：PLANT METHODS （ 影响因子：4.4； 五年影响因子：5.7 ）

ISSN：

年卷期： 2024 年 20 卷 1 期

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收录情况： SCI

摘要： BackgroundPhenotyping of plant traits presents a significant bottleneck in Quantitative Trait Loci (QTL) mapping and genome-wide association studies (GWAS). Computerized phenotyping using digital images promises rapid, robust, and reproducible measurements of dimension, shape, and color traits of plant organs, including grain, leaf, and floral traits.ResultsWe introduce GRABSEEDS, which is specifically tailored to extract a comprehensive set of features from plant images based on state-of-the-art computer vision and deep learning methods. This command-line enabled tool, which is adept at managing varying light conditions, background disturbances, and overlapping objects, uses digital images to measure plant organ characteristics accurately and efficiently. GRABSEED has advanced features including label recognition and color correction in a batch setting.ConclusionGRABSEEDS streamlines the plant phenotyping process and is effective in a variety of seed, floral and leaf trait studies for association with agronomic traits and stress conditions. Source code and documentations for GRABSEEDS are available at: https://github.com/tanghaibao/jcvi/wiki/GRABSEEDS.

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