Complete genome sequence of a new virus from Allium sativum L in China

文献类型： 外文期刊

第一作者： Peng, Zhengyu

作者： Peng, Zhengyu;Chen, Yi;Peng, Jiejun;Zheng, Hongying;Wu, Guanwei;Rao, Shaofei;Wu, Jian;Xu, Zhongtian;Chen, Jianping;Lu, Yuwen;Yan, Fei;Luo, Zhaopeng;Guo, Fengling

作者机构：

关键词： GYCV; Garlic; Viral genome sequencing; Betaflexiviridae

期刊名称：ARCHIVES OF VIROLOGY （ 影响因子：2.7； 五年影响因子：2.4 ）

ISSN： 0304-8608

年卷期： 2023 年 168 卷 6 期

页码：

收录情况： SCI

摘要： The complete genome of a new virus belonging to the family Betaflexiviridae was identified in garlic and sequenced by next-generation sequencing and reverse transcription PCR. The complete RNA genome (GenBank accession number OP021693) is 8191 nucleotides in length, excluding the 3' poly(A) tail, and contains five open reading frames (ORFs). These open reading frames encode the viral replicase, triple gene block, and coat protein, and the genome organization is typical of members of the subfamily Quinvirinae. The virus has been tentatively named "garlic yellow curl virus" (GYCV). Phylogenetic analysis suggested that it represents an independent evolutionary lineage in the subfamily, clustering with the currently unclassified garlic yellow mosaic associated virus (GYMaV) and peony betaflexivirus 1 (PeV1). Differences between the phylogenies inferred for the replicase and coat protein indicate that the new virus does not belong to any established genus of the family Betaflexiviridae. This is the first report of GYCV in China.

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