Favorable pleiotropic loci for fiber yield and quality in upland cotton (Gossypium hirsutum)

文献类型： 外文期刊

第一作者： Wang, Pengpeng

作者： Wang, Pengpeng;He, Shoupu;Pan, Zhaoe;Sun, Junling;Geng, Xiaoli;Peng, Zhen;Gong, Wenfang;Wang, Liru;Pang, Baoyin;Jia, Yinhua;Du, Xiongming;Sun, Gaofei

作者机构：

期刊名称：SCIENTIFIC REPORTS （ 影响因子：4.38； 五年影响因子：5.134 ）

ISSN： 2045-2322

年卷期： 2021 年 11 卷 1 期

页码：

收录情况： SCI

摘要： Upland cotton (Gossypium hirsutum L.) is an important economic crop for renewable textile fibers. However, the simultaneous improvement of yield and fiber quality in cotton is difficult as the linkage drag. Compared with breaking the linkage drag, identification of the favorable pleiotropic loci on the genome level by genome-wide association study (GWAS) provides a new way to improve the yield and fiber quality simultaneously. In our study restriction-site-associated DNA sequencing (RAD-seq) was used to genotype 316 cotton accessions. Eight major traits in three categories including yield, fiber quality and maturation were investigated in nine environments (3 sitesx3 years). 231 SNPs associated with these eight traits (-log(10)(P)>5.27) were identified, located in 27 genomic regions respectively by linkage disequilibrium analysis. Further analysis showed that four genomic regions (the region 1, 6, 8 and 23) held favorable pleiotropic loci and 6 candidate genes were identified. Through genotyping, 14 elite accessions carrying the favorable loci on four pleiotropic regions were identified. These favorable pleiotropic loci and elite genotypes identified in this study will be utilized to improve the yield and fiber quality simultaneously in future cotton breeding.

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