Chromosome-level assembly and evolution analysis of the Trichosanthes truncata genome
文献类型: 外文期刊
第一作者: Hu, Ying
作者: Hu, Ying;Wei, Xiaomei;Wei, Fan;Peng, Yude;Huang, Baoyou;Wei, Kunhua;Hu, Ying;Wei, Xiaomei;Wei, Fan;Wei, Kunhua;Chu, Zhuannan;Dong, Ling;Li, Weiwen
作者机构:
期刊名称:SCIENTIFIC DATA ( 影响因子:5.8; 五年影响因子:8.9 )
ISSN:
年卷期: 2024 年 11 卷 1 期
页码:
收录情况: SCI
摘要: Trichosanthes truncata C. B. Clarke, an important medicinal plant, is a dioecious plant belonging to the Cucurbitaceae family. This study presents a chromosomal-level reference genome assembly for T. truncata. Through the integration of PacBio high-fidelity sequencing and high-throughput chromosome conformation capture technology, a final genome sequence of 637.41 Mb was assembled, with an N50 of 57.24 Mb and consisting of 11 pseudochromosomes. Additionally, 97.21 Mb of repetitive sequences and 36,172 protein-coding genes were annotated. This high-quality genome assembly is of utmost significance for studying the molecular mechanisms underlying the biosynthesis of bioactive compounds. Furthermore, this study provided valuable insights into plant comparative genomics research.
分类号:
- 相关文献
作者其他论文 更多>>
-
Polymerization of beneficial plant height QTLs to develop superior lines which can achieving hybrid performance levels
作者:Kang, Congbin;Hao, Yichen;Sun, Mingfei;Li, Mengyao;Tian, Ziang;Zhao, Yajie;Zhou, Chao;Zhao, Xiang Yu;Zhang, Xian Sheng;Yang, Xuerong;Liu, Hongjun;Zhang, Lin;Dong, Ling;Liu, Xianjun;Zeng, Xing;Sun, Yanjie;Cao, Shiliang;Luebberstedt, Thomas
关键词:Heterosis; Complex agronomic traits; Plant height; Molecular design; Pyramiding QTL line (PQL); Maize
-
GWAS analysis reveals candidate genes associated with density tolerance (ear leaf structure) in maize (Zea mays L.)
作者:Li, Chunxiang;Song, Yongfeng;Zhu, Yong;Cao, Mengna;Han, Xiao;Xu, Yan;Zhou, Yu;Zeng, Xing;Zhang, Lin;Dong, Ling;Wang, Zhenhua;Di, Hong;Fan, Jinsheng;Sun, Dequan
关键词:maize; planting density; ear leaf structure; GWAS; candidate genes
-
Genome-wide identification and development of SSR molecular markers for genetic diversity studies in Ilex asprella
作者:Li, Jingchun;Quan, Changqian;Wei, Fan;Xu, Meihua;Tang, Danfeng;Li, Jingchun;Tang, Danfeng;Wei, Rongchang;Ma, Qing;Huang, Yuquan
关键词:
Ilex asprella ; SSR identification and development; germplasm resource; species identification; genetic diversity -
ZmBARK1 as a low-temperature tolerance gene in maize germination
作者:Xu, Qingyu;Song, Yiying;Bao, Di;Di, Hong;Zhang, Lin;Dong, Ling;Zeng, Xing;Zhang, Jiayue;Li, Chunxiang;Xing, Jiapeng;Zhang, Naifu;Li, Xin;Wang, Zhenhua;Zhou, Yu;Meng, Lingzhi;Weng, Jianfeng
关键词:Maize; Low-temperature; GWAS; RNA-seq; ZmBARK1
-
Mixtures of entomopathogenic nematodes provided successful suppression of Bactrocera tau by stimulated dispersal, aggregation, and invasion
作者:Liu, Jingqi;Wang, Guiping;Guo, Wenxiu;Yu, Yi;Li, Weiwen;Liang, Hua;Chu, Zhuannan;Wang, Congli;Liu, Jingqi;Liu, Jingqi;Jin, Linhong
关键词:Invasive pest; Bactrocera tau; Steinernema; Heterorhabditis; Biological control; Interspecific interaction; Behavior mechanisms; Trichosanthes kirilowii Maxim
-
Chemical Isotope Labeling Liquid Chromatograph-Mass Spectrometer: A Powerful Tool for Analyzing Non-Volatile Organic Acids in Baijiu
作者:Zhao, Chi;Zhang, Fengju;Dong, Ling;Li, Zhihua;Mao, Zhenyu;Song, Chuan;Xiong, Yanfei;Fu, Xin;Zhang, Suyi;Li, Zhihua;Mao, Zhenyu;Song, Chuan;Xiong, Yanfei;Fu, Xin;Zhang, Suyi;Li, Zhihua;Penttinen, Petri;Zhang, Xiaoping;Penttinen, Petri
关键词:CIL-HRMS; metabolomics; NVOAs; different-flavored baijiu; biomarkers
-
Evaluation of Gualouzi quality using hyperspectral imaging technology and explainable artificial intelligence
作者:Xiao, Dan;Bai, Ruibin;Wang, Siman;Wang, Youyou;Hao, Qingxiu;Yang, Jian;Dong, Ling;Li, Weiwen;Bai, Ruibin;Yang, Jian
关键词:Explainable artificial intelligence; Food quality; Gualouzi; Hyperspectral imaging; Shapley additive explanations