A Genome-Scale Co-Functional Network of Xanthomonas Genes Can Accurately Reconstruct Regulatory Circuits Controlled by Two-Component Signaling Systems

文献类型： 外文期刊

第一作者： Kim, Hanhae

作者： Kim, Hanhae;Lee, Muyoung;Yang, Sunmo;Lee, Insuk;Joe, Anna;Ronald, Pamela C.;Joe, Anna;Ronald, Pamela C.;Ma, Xiaozhi;Kim, Hanhae;Joe, Anna;Ronald, Pamela C.

作者机构：

关键词： co-functional network; plant bacterial pathogen; Xanthomonas oryzae pv. oryzae

期刊名称：MOLECULES AND CELLS （ 影响因子：5.034； 五年影响因子：4.932 ）

ISSN： 1016-8478

年卷期： 2019 年 42 卷 2 期

页码：

收录情况： SCI

摘要： Bacterial species in the genus Xanthomonas infect virtually all crop plants. Although many genes involved in Xanthomonas virulence have been identified through molecular and cellular studies, the elucidation of virulence-associated regulatory circuits is still far from complete. Functional gene networks have proven useful in generating hypotheses for genetic factors of biological processes in various species. Here, we present a genome-scale co-functional network of Xanthomonas oryze pv. oryzae (Xoo) genes, XooNet (www.inetbio.org/xoonet/), constructed by integrating heterogeneous types of genomics data derived from Xoo and other bacterial species. XooNet contains 106,000 functional links, which cover approximately 83% of the coding genome. XooNet is highly predictive for diverse biological processes in Xoo and can accurately reconstruct cellular pathways regulated by two-component signaling transduction systems (TCS). XooNet will be a useful in silico research platform for genetic dissection of virulence pathways in Xoo.

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