Gap-free genome assembly of anadromous Coilia nasus

文献类型： 外文期刊

第一作者： Ma, Fengjiao

作者： Ma, Fengjiao;Wang, Yinping;Xu, Pao;Yin, Guojun;Liu, Kai;Wang, Yinping;Yin, Denghua;Yang, Yanping;Xu, Pao;Yin, Guojun;Liu, Kai;Su, Bixiu;Zhao, Chenxi;Chen, Chunhai;Wang, Chenhe;Luo, Bei;Wang, Hongqi;Jian, Jianbo;Deng, Yanmin;Xu, Pao;Liu, Kai

作者机构：

期刊名称：SCIENTIFIC DATA （ 影响因子：9.8； 五年影响因子：10.8 ）

ISSN：

年卷期： 2023 年 10 卷 1 期

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收录情况： SCI

摘要： The Chinese tapertail anchovy, Coilia nasus, is a socioeconomically important anadromous fish that migrates from near ocean waters to freshwater to spawn every spring. The analysis of genomic architecture and information of C. nasus were hindered by the previously released versions of reference genomes with gaps. Here, we report the assembly of a chromosome-level gap-free genome of C. nasus by incorporating high-coverage and accurate long-read sequence data with multiple assembly strategies. All 24 chromosomes were assembled without gaps, representing the highest completeness and assembly quality. We assembled the genome with a size of 851.67 Mb and used BUSCO to estimate the completeness of the assembly as 92.5%. Using a combination of de novo prediction, protein homology and RNA-seq annotation, 21,900 genes were functionally annotated, representing 99.68% of the total predicted protein-coding genes. The availability of gap-free reference genomes for C. nasus will provide the opportunity for understanding genome structure and function, and will also lay a solid foundation for further management and conservation of this important species.

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