文献类型： 外文期刊
第一作者： Sun, Rui
作者： Sun, Rui;Li, Shuangtao;Chang, Linlin;Dong, Jing;Zhong, Chuanfei;Zhang, Hongli;Wei, Lingzhi;Gao, Yongshun;Wang, Guixia;Zhang, Yuntao;Sun, Jian;Sun, Rui;Li, Shuangtao;Chang, Linlin;Dong, Jing;Zhong, Chuanfei;Zhang, Hongli;Wei, Lingzhi;Gao, Yongshun;Wang, Guixia;Zhang, Yuntao;Sun, Jian;Sun, Rui;Li, Shuangtao;Chang, Linlin;Dong, Jing;Zhong, Chuanfei;Zhang, Hongli;Wei, Lingzhi;Gao, Yongshun;Wang, Guixia;Zhang, Yuntao;Sun, Jian
作者机构：
关键词： chromosomal assembly; Fragaria pentaphylla; gene annotation; Hi-C; PacBio
期刊名称：FRONTIERS IN GENETICS （ 影响因子：4.772； 五年影响因子：4.933 ）
ISSN：
年卷期： 2022 年 13 卷
页码：
收录情况： SCI
摘要： Fragaria pentaphylla, a wild diploid quinquefoliolate species of Fragaria, is native to Southwest China. It has two morphs of red and white fruit color in nature and has characteristics of unique fragrance and resistance, which made it not only a valuable breeding material but also a potential model plant for molecular function researches. Here, we generate a high-quality chromosome-level genome assembly of a F. pentaphylla accession, BAAFS-FP039 employing a combination of PacBio Long-Read Sequencing, Illumina Short-Read Sequencing, and Hi-C Sequencing. The assembled genome contained 256.74 Mb and a contig N50 length of 32.38 Mb, accounting for 99.9% of the estimated genome (256.77 Mb). Based on Hi-C data, seven pseudo-chromosomes of F. pentaphylla-FP039 genome were assembled, covering 99.39% of the genome assembly. The genome was composed of 44.61% repetitive sequences and 29,623 protein-coding genes, 97.62% of protein-coding genes could be functionally annotated. Phylogenetic and chromosome syntenic analysis revealed that F. pentaphylla-FP039 was closely related to F. nubicola. This high-quality genome could provides fundamental molecular resources for evolutionary studies, breeding efforts, and exploring the unique biological characteristics of F. pentaphylla.
分类号：
- 相关文献
作者其他论文 更多>>
-
Comparative miRNAome combined with transcriptome and degradome analysis reveals a novel miRNA-mRNA regulatory network associated with starch metabolism affecting pre-harvest sprouting resistance in wheat
作者：Sun, Longqing;Qin, Dandan;Dong, Jing;Zhao, Ting;Ren, Xifeng;Zhang, Daorong
关键词：Wheat; Pre-harvest sprouting; MiRNA; Seed germination; Starch
-
Bioenhanced remediation of dibutyl phthalate contaminated black soil by immobilized biochar microbiota
作者：Tao, Yue;Wang, Yao;Cui, Yunhe;Sun, Rui;Zhang, Bo;Qu, Jianhua;Zhang, Ying;Cai, Hongguang
关键词：Biochar; DBP; Microbial remediation; Black soil; Soil nutrient
-
Unveiling the aromatic diversity of Fermented mango juices through 40 plant-derived Lactiplantibacillus plantarum
作者：Ma, Tianyu;Wang, Chunguang;Zhang, Xinyue;Zhu, Yuxuan;Liu, Jiani;Zhu, Baoqing;Sun, Jian;Ye, Dongqing
关键词：Lactiplantibacillus plantarum; Mango juice; Acid-producing diversity; Aroma-producing diversity; Napping
-
The addition of vermiculite reduced antibiotic resistance genes during composting: Novel insights based on reducing host bacteria abundance and inhibiting plasmid-mediated conjugative transfer
作者：Sun, Yifan;Zhao, Zixuan;Gao, Zixuan;Hu, Tao;An, Lu;Gu, Jie;Wang, Xiaojuan;Gu, Jie;Wang, Xiaojuan;Sun, Jian;Guo, Honghong
关键词：Antibiotic resistance gene; Host bacteria; Mobile genetic elements; Conjugative transfer; Vermiculite
-
Integration of volatile and non-volatile metabolite profile, and in vitro digestion reveals the differences between different preparation methods on physico-chemical and biological properties of Gastrodia elata
作者：Li, Shi;He, Xiahong;Zhang, Xuechun;Wang, Zhenxing;Kong, Kin Weng;Xie, Jianhua;Sun, Jian
关键词：Gastrodia elata Blume; Processing and drying method; In vitro simulated digestion; Biological activity; Sensory assessment; Metabolite
-
Characteristics and functions of interleukin 21 in channel catfish (Ictalurus punctatus)
作者：He, Hao;He, Hao;Zhu, Xia;Dong, Jing;Yang, Qiuhong;Ai, Xiaohui;Yang, Yibin;Deng, Ping;Huang, Yucong;Wang, Hui
关键词：Channel catfish; IL-21; Immune response; Inflammatory factors; Gene expression
-
Precise genome editing of Dense and Erect Panicle 1 promotes rice sheath blight resistance and yield production in japonica rice
作者：Zhu, Hongyao;Zhou, Tiange;Li, Zhuo;Xuan, Yuan Hu;Zhu, Hongyao;Zhou, Tiange;Li, Zhuo;Xuan, Yuan Hu;Zhu, Hongyao;Zhou, Tiange;Li, Zhuo;Guan, Jiaming;Yang, Xiurong;Li, Yuejiao;Sun, Jian;Xu, Quan;Sun, Jian
关键词：DEP1; genome editing; yield; sheath blight; resistance; rice
