Three-dimensional branch segmentation and phenotype extraction of maize tassel based on deep learning

文献类型： 外文期刊

第一作者： Zhang, Wenqi

作者： Zhang, Wenqi;Wu, Sheng;Wen, Weiliang;Lu, Xianju;Wang, Chuanyu;Gou, Wenbo;Li, Yuankun;Guo, Xinyu;Zhao, Chunjiang;Zhang, Wenqi;Wu, Sheng;Wen, Weiliang;Lu, Xianju;Wang, Chuanyu;Gou, Wenbo;Li, Yuankun;Guo, Xinyu;Zhao, Chunjiang;Zhang, Wenqi

作者机构： Beijing Acad Agr & Forestry Sci, Informat Technol Res Ctr, Beijing 100097, Peoples R China;Natl Engn Res Ctr Informat Technol Agr, Beijing Key Lab Digital Plant, Beijing 100097, Peoples R China;Shanghai Ocean Univ, Coll Informat Technol, Shanghai 201306, Peoples R China

关键词： Maize tassel; Point cloud; Deep learning; Organ segmentation; Tassel phenotype; DUS testing

期刊名称：PLANT METHODS （ 2022影响因子：5.1； 五年影响因子：6.1 ）

ISSN：

年卷期： 2023 年 19 卷 1 期

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收录情况： SCI

摘要： BackgroundThe morphological structure phenotype of maize tassel plays an important role in plant growth, reproduction, and yield formation. It is an important step in the distinctness, uniformity, and stability (DUS) testing to obtain maize tassel phenotype traits. Plant organ segmentation can be achieved with high-precision and automated acquisition of maize tassel phenotype traits because of the advances in the point cloud deep learning method. However, this method requires a large number of data sets and is not robust to automatic segmentation of highly adherent organ components; thus, it should be combined with point cloud processing technology.ResultsAn innovative method of incomplete annotation of point cloud data was proposed for easy development of the dataset of maize tassels,and an automatic maize tassel phenotype analysis system: MaizeTasselSeg was developed. The tip feature of point cloud is trained and learned based on PointNet + + network, and the tip point cloud of tassel branch was automatically segmented. Complete branch segmentation was realized based on the shortest path algorithm. The Intersection over Union (IoU), precision, and recall of the segmentation results were 96.29, 96.36, and 93.01, respectively. Six phenotypic traits related to morphological structure (branch count, branch length, branch angle, branch curvature, tassel volume, and dispersion) were automatically extracted from the segmentation point cloud. The squared correlation coefficients (R-2) for branch length, branch angle, and branch count were 0.9897, 0.9317, and 0.9587, respectively. The root mean squared error (RMSE) for branch length, branch angle, and branch count were 0.529 cm, 4.516, and 0.875, respectively.ConclusionThe proposed method provides an efficient scheme for high-throughput organ segmentation of maize tassels and can be used for the automatic extraction of phenotypic traits of maize tassel. In addition, the incomplete annotation approach provides a new idea for morphology-based plant segmentation.

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