The complete mitochondrial genome of the Sichuan taimen (Hucho bleekeri): Repetitive sequences in the control region and phylogenetic implications for Salmonidae

文献类型： 外文期刊

第一作者： Du, Jun

作者： Du, Jun;Wang, Ying;Guo, Rui;Zhang, Xiuyue;Song, Zhaobin

作者机构：

关键词： Mitochondrial DNA;Genome structure;Tandem repeat;Phylogenetic analysis;Hucho bleekeri;Salmonidae

期刊名称：MARINE GENOMICS （ 影响因子：1.71； 五年影响因子：1.969 ）

ISSN：

年卷期：

页码：

收录情况： SCI

摘要： The complete mitochondrial DNA genome of the Sichuan taimen (Hucho bleekeri) was determined by the long and accurate polymerase chain reaction (LA-PCR) and primer walking sequence method. The entire mitochondrial genome of this species is 16,997 bp in length, making it the longest among the completely sequenced Salmonidae mitochondrial genomes. It consists of two ribosomal RNA (rRNA) genes, 13 proteincoding genes, 22 transfer RNA (tRNA) genes, and one control region (CR). The gene arrangement, nucleotide composition, and codon usage pattern of the mitochondrial genome are similar to those of other teleosts. A T-type mononucleotide microsatellite and an 82 bp tandem repeat were identified in the control region, which were almost identical among the three H. bleekeri individuals examined. Both phylogenetic analyses based on 12 concatenated protein-coding genes of the heavy strand and on just the control region show that H. bleekeri is a basal species in Salmoninae. In addition, Salmo, Salvelinus and Oncorhynchus all represent monophyletic groups, respectively. All freshwater species occupied basal phylogenetic positions, and also possessed various tandem repeats in their mitochondrial control regions. These results support established phylogenetic relationships among genera in Salmonidae based on morphological and molecular analyses, and are consistent with the hypothesis that Salmonidae evolved from freshwater species.

分类号： Q3

  • 相关文献

[1]The complete mitochondrial genome of the Endangered Hucho bleekeri ( Salmonidae: huchen). Zhang, Shuhuan,Wei, Qiwei,Du, Hao,Li, Luoxin. 2016

[2]Phylogeny and dating of divergences within the genus Thymallus (Salmonidae: Thymallinae) using complete mitochondrial genomes. Ma, Bo,Sun, Peng,Jiang, Haiying,Chen, Jinping,Li, Linmiao,Zhang, Xiujuan,Yuan, Lihong,Jiang, Haiying,Chen, Jinping,Li, Linmiao,Zhang, Xiujuan,Yuan, Lihong,Jiang, Haiying,Chen, Jinping,Li, Linmiao,Zhang, Xiujuan,Yuan, Lihong.

[3]Sequencing and characterization of the complete mitochondrial genome from the pancreatic fluke Eurytrema pancreaticum (Trematoda: Dicrocoeliidae). Chang, Qiao-Cheng,Zheng, Xu,Zhang, Yan,Duan, Hong,Yue, Dong-Mei,Fu, Xue,Su, Xin,Gao, Yuan,Wang, Chun-Ren,Liu, Guo-Hua,Gao, Jun-Feng.

[4]Complete mitochondrial genome sequence data provides genetic evidence that the brown dog tick Rhipicephalus sanguineus (Acari: Ixodidae) represents a species complex. Liu, Guo-Hua,Chen, Fen,Chen, Yi-Zhou,Song, Hui-Qun,Lin, Rui-Qing,Zhou, Dong-Hui,Zhu, Xing-Quan,Liu, Guo-Hua,Zhu, Xing-Quan,Chen, Fen,Chen, Yi-Zhou,Lin, Rui-Qing.

[5]Sequence variation in three mitochondrial genes among Gasterophilus intestinalis isolates from two distinct regions in China. Gao, De-Zhen,Zhu, Xing-Quan,Wang, Chun-Ren,Gao, De-Zhen,Liu, Guo-Hua,Zhu, Xing-Quan,Wang, Guang-Lei.

[6]The complete mitochondrial genome of the crucian carp, Carassius carassius (Cypriniformes, Cyprinidae). Cheng, Lei,Liang, Li-Qun,Sun, Xiao-Wen,Cheng, Lei.

[7]Comparative analyses of the complete mitochondrial genomes of the two ruminant hookworms Bunostomum trigonocephalum and Bunostomum phlebotomum. Gao, Jun-Feng,Zhang, Yan,Zhang, Ying,Wang, Wen-Tao,Chang, Qiao-Cheng,Wang, Chun-Ren,Zhu, Xing-Quan,Gao, Jun-Feng,Zhao, Quan,Wang, Chun-Ren,Zhu, Xing-Quan,Liu, Guo-Hua,Liu, Guo-Hua,Zhu, Xing-Quan.

[8]Sequence variability in four mitochondrial genes among rabbit pinworm (Passalurus ambiguus) isolates from different localities in China. Sheng, Li,Zou, Feng-Cai,Zhu, Xing-Quan,Sheng, Li,Zhu, Xing-Quan,Cui, Ping,Fang, Su-Fang,Lin, Rui-Qing. 2015

[9]Sequence variation in four mitochondrial genes among sibling species within Contracaecum rudolphii sensu lato. Lin, Rui-Qing,Zhang, Yuan,Weng, Ya-Biao,Lin, Rui-Qing,Liu, Guo-Hua,Zhang, Yuan,Song, Hui-Qun,Zhu, Xing-Quan,Liu, Guo-Hua,Zhu, Xing-Quan,D'Amelio, Stefano,Zou, Feng-Cai,Zhu, Xing-Quan.

[10]Sequence variability in three mitochondrial genes between the two pig nodule worms Oesophagostomum dentatum and O. quadrispinulatum. Lin, Rui-Qing,Liu, Guo-Hua,Song, Hui-Qun,Zhang, Yuan,Zhu, Xing-Quan,Lin, Rui-Qing,Zhang, Yuan,Yuan, Zi-Guo,Weng, Ya-Biao,Liu, Guo-Hua,Li, Ming-Wei,Zou, Feng-Cai,Zhu, Xing-Quan,Zhu, Xing-Quan.

[11]Genetic variability among Trichuris ovis isolates from different hosts in Guangdong Province, China revealed by sequences of three mitochondrial genes. Wang, Yan,Liu, Guo-Hua,Li, Jia-Yuan,Xu, Min-Jun,Zhou, Dong-Hui,Song, Hui-Qun,Zhu, Xing-Quan,Wang, Yan,Li, Jia-Yuan,Lin, Rui-Qing,Liu, Guo-Hua,Zhu, Xing-Quan,Ye, Yong-Gang,Zhu, Xing-Quan.

[12]Chabertia erschowi (Nematoda) is a distinct species based on nuclear ribosomal DNA sequences and mitochondrial DNA sequences. Liu, Guo-Hua,Zhao, Lei,Song, Hui-Qun,Zhu, Xing-Quan,Zhao, Lei,Zhao, Quan,Zhu, Xing-Quan,Liu, Guo-Hua,Zhu, Xing-Quan,Zhao, Guang-Hui,Cai, Jin-Zhong. 2014

[13]The complete mitochondrial genome of Barbus capito (Cypriniformes, Cyprinidae). Dong, Xiao-Li,Xu, Wei,Wei, Ying-Ying,Xu, Qi-You.

[14]Fasciolopsis buski (Digenea: Fasciolidae) from China and India may represent distinct taxa based on mitochondrial and nuclear ribosomal DNA sequences. Ma, Jun,Sun, Miao-Miao,He, Jun-Jun,Liu, Guo-Hua,Zhu, Xing-Quan,Sun, Miao-Miao,Liu, Guo-Hua,Ai, Lin,Chen, Mu-Xin,Zhu, Xing-Quan. 2017

[15]Development of 27 novel cross-species microsatellite markers for the endangered Hucho bleekeri using next-generation sequencing technology. Wang, Ke,Wei, Qiwei,Zhang, Shuhuan,Wang, Dengqiang,Xin, Miaomiao,Wu, Jinming,Sun, Qingliang,Du, Hao,Wang, Chengyou,Huang, Jun,Wei, Qiwei.

[16]Expression of Short Peptide by an Improved Isocaudamer Tandem Repeat Strategy. An, Tong-Qing,Zhang, Yi,Tian, Zhi-Jun,Leng, Chao-Liang,Yang, Yong-Qian,Peng, Jin-Mei,Tong, Guang-Zhi,Tong, Guang-Zhi.

[17]Complete mitochondrial genome of the mudskipper Boleophthalmus pectinirostris (Perciformes, Gobiidae): Repetitive sequences in the control region. Liu, Zhi Zhi,Wang, Cong Tao,He, An Yuan,Yang, Jin Quan,Tang, Wen Qiao,Liu, Zhi Zhi,Ma, Ling Bo.

[18]Revalidation and redescription of Brachymystax tsinlingensis Li, 1966 (Salmoniformes: Salmonidae) from China. Xing, Ying-Chun,Fan, En-Yuan,Xing, Ying-Chun,Ye, En-Qi,Zhang, Chun-Guang,Zhao, Ya-Hui,Lv, Bin-Bin,Li, Shi-Yang,Wang, Li-Xin.

[19]The complete mitochondrial genome of the endangered Hucho hucho (Salmonidae: Huchen). Zhang, Shuhuan,Wei, Qiwei,Wang, Ke,Du, Hao,Xin, Miaomiao,Wu, Jinming.

[20]The complete mitochondrial genome of Eleotris oxycephala (Perciformes: Eleotridae). Meng, Yongyong,Ma, Hongyu,Ma, Chunyan,Wei, Hongqing,Liu, Yuexing,Zhang, Fengying,Wang, Wei,Chen, Wei,Zhao, Mengdi,Chen, Fenfang,Ma, Lingbo,Meng, Yongyong,Wei, Hongqing,Liu, Yuexing,Zhao, Mengdi,Chen, Fenfang. 2016

作者其他论文 更多>>

微信小程序